View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11171A_low_290 (Length: 204)
Name: NF11171A_low_290
Description: NF11171A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11171A_low_290 |
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Alignment Details
Target: chr6 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 31 - 187
Target Start/End: Complemental strand, 3316989 - 3316833
Alignment:
| Q |
31 |
agctttaaaagtctctcctaaaactgacacaaacacaacaaatattacttattgtgtccaaacatactaatagtaccgtaggtagtgtaaggcattatta |
130 |
Q |
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| T |
3316989 |
agctttaaaagtctctcctaaaactgacacaaacacaacaaatattacttattgtgtccaaacatactaatagtaccgtaggtagtataaggcattatta |
3316890 |
T |
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| Q |
131 |
caaaataaatacatcaagcatacatgggaaaccgtaaatgtagcttagaaagaaaga |
187 |
Q |
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|||||||||||||| |||||||||||| ||| |||||||||||||||||||||||| |
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| T |
3316889 |
caaaataaatacatgaagcatacatggcaaattgtaaatgtagcttagaaagaaaga |
3316833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 30 - 136
Target Start/End: Complemental strand, 3324326 - 3324224
Alignment:
| Q |
30 |
aagctttaaaagtctctcctaaaactgacacaaacacaacaaatattacttattgtgtccaaacatactaatagtaccgtaggtagtgtaaggcattatt |
129 |
Q |
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|||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||||||||| |
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| T |
3324326 |
aagctttaaaagtctcacctaaaaccagcacaaccacaacaaatattacttattgtgtccaaacatacta----tactgtaggtagtataaggcattatt |
3324231 |
T |
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| Q |
130 |
acaaaat |
136 |
Q |
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||||||| |
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| T |
3324230 |
acaaaat |
3324224 |
T |
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