View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11171A_low_293 (Length: 203)
Name: NF11171A_low_293
Description: NF11171A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11171A_low_293 |
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Alignment Details
Target: chr8 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 22679169 - 22679349
Alignment:
| Q |
1 |
accaattaattctgaaggtattttattgggatcagacatagtcgatgtatcttttctatttaattgtcatatatttctataacatcatcattggtttttc |
100 |
Q |
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| T |
22679169 |
accaattaattctgaaggtatggtatcgggatcagacacaatcgatgtatcttttctatttaattgtcatatatttctataacatcatcattggtttttc |
22679268 |
T |
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| Q |
101 |
tttcaggtcgaagaggaaagaaaaagtcagcggtgtctcctgttggaaaacaaggtatcttgttgtctttggctatttctg |
181 |
Q |
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| T |
22679269 |
tttcaggtcgaagaggaaagaaaaagtcagcggtgtctcctgttgtaaaacaaggtatcttgttgtctttggctatttctg |
22679349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 53 - 109
Target Start/End: Original strand, 22680507 - 22680564
Alignment:
| Q |
53 |
tttctatttaattgtcatatatttctataacatcatca-ttggtttttctttcaggtc |
109 |
Q |
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| T |
22680507 |
tttctatttaattgtcatttatttctataacatcgtcatttggtttctctttcaggtc |
22680564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 21227271 - 21227112
Alignment:
| Q |
1 |
accaattaattctgaaggtattttattgggatcagacatagtcgatgtatcttttctatttaattgtcatatatttctataacatcatcattggtttttc |
100 |
Q |
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| T |
21227271 |
accaattaattttgaaggtatgctatctggactagacacaatcaatgtatcttttctatt-aattgtcatgtatttctataaaatcgtcactggtttctc |
21227173 |
T |
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| Q |
101 |
tttcaggtcgaagaggaaagaaaaagtcagcggtgtctcctgttggaaaacaaggtatctt |
161 |
Q |
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| T |
21227172 |
tttcaggtcaggaaggaaaatcactgtcagcggtgtctcctgttgtaaaacaaggtatctt |
21227112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 41 - 160
Target Start/End: Complemental strand, 2384834 - 2384715
Alignment:
| Q |
41 |
gtcgatgtatcttttctatttaattgtcatatatttctataacatcatcattggtttttctttcaggtcgaagaggaaagaaaaagtcagcggtgtctcc |
140 |
Q |
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||||||||||| ||||||||||||| |||| ||||||||| |||||||| |||||| ||||||||||||| |||| | | |||||| |||||||| |
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| T |
2384834 |
gtcgatgtatcctttctatttaattttcatgtatttctatcgcatcatcactggtttctctttcaggtcgagaaggataatcattgtcagcagtgtctcc |
2384735 |
T |
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| Q |
141 |
tgttggaaaacaaggtatct |
160 |
Q |
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| T |
2384734 |
tgttgtaaaacaaggtatct |
2384715 |
T |
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