View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11171A_low_297 (Length: 202)
Name: NF11171A_low_297
Description: NF11171A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11171A_low_297 |
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Alignment Details
Target: chr7 (Bit Score: 127; Significance: 9e-66; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 36 - 182
Target Start/End: Original strand, 36904072 - 36904218
Alignment:
| Q |
36 |
atggacatcatagaagatcgtatactcatttagtaaaagaaaaagaaaacaagaacatatactgaaatataatggccttataaggcaaactaaagcgatt |
135 |
Q |
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| T |
36904072 |
atggaaataatagaagatcgtatactcatttagtaaaagaaaaagaaaacaagaacatatactgaaatataacggccttataaggcaaactaaagcgatt |
36904171 |
T |
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| Q |
136 |
gttctaataaattttgaagcaaaccattacactaagaaccctaaaaa |
182 |
Q |
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| T |
36904172 |
gttctaataaattttgaagcaaaccattatactaagaaccccaaaaa |
36904218 |
T |
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Target: chr7; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 36 - 138
Target Start/End: Complemental strand, 37073837 - 37073736
Alignment:
| Q |
36 |
atggacatcatagaagatcgtatactcatttagtaaaagaaa-aagaaaacaagaacatatactgaaatataatggccttataaggcaaactaaagcgat |
134 |
Q |
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||||| || ||||||||| |||| ||||| |||||||||||| |||||| ||||||||| |||| |||||||||||||| |||||||| ||||| |||| |
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| T |
37073837 |
atggaaataatagaagattgtatgctcatatagtaaaagaaagaagaaagcaagaacatctactcaaatataatggcct--taaggcaagctaaatcgat |
37073740 |
T |
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| Q |
135 |
tgtt |
138 |
Q |
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|||| |
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| T |
37073739 |
tgtt |
37073736 |
T |
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