View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11171A_low_3 (Length: 603)
Name: NF11171A_low_3
Description: NF11171A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11171A_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 130; Significance: 5e-67; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 20 - 153
Target Start/End: Complemental strand, 7172939 - 7172806
Alignment:
| Q |
20 |
aataggacttcaaaagttgtatgtgctgagttgggatcactgcttgaaaacacattttattataaacttatttgcttgagacatgagccttgctgtgaga |
119 |
Q |
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| T |
7172939 |
aataggacttcaaaagttgtatgtgctgagttgggatcactgcttgaaaacacattttattataaacttatttgcttgagacatgagccttgctgtgaga |
7172840 |
T |
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| Q |
120 |
tcacatttggatgctatatccttaagatttgata |
153 |
Q |
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| T |
7172839 |
tcacatttggatgctatttccttaagatttgata |
7172806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 39 - 368
Target Start/End: Complemental strand, 7166617 - 7166269
Alignment:
| Q |
39 |
tatgtgctgagttgggatcactgcttgaaaacacattttattataaacttatttgcttgagacatgagccttgctgtgagatcacatttggatgctatat |
138 |
Q |
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| T |
7166617 |
tatgtgctgagttgggatcgctgcttgaaaacatattttactataagcttacttgcttgagatatgagcctttttgtgagatcgcattgggatgctattt |
7166518 |
T |
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| Q |
139 |
ccttaagatttgatacatgtttagcttcatgcttacagaattccatccagggattatttatttattggtaataaaagtt-atctcaatcaatctttttga |
237 |
Q |
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| T |
7166517 |
ccttaagattggatacatgtttagctttatgcttacttaattccatccaagg-ttgtttatacattggtaataaaagttaagctcattcaatctttttga |
7166419 |
T |
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| Q |
238 |
gacct----------------ttctttcatttgtactatttcagactt----agggatttttctgttcaatttcctgtcagatctttagtcccctgctct |
317 |
Q |
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| T |
7166418 |
gacctttctttagtggaagcattctttcatttgaacaatttcagactttttgagtgatttttctgttcaatttcatctcagatttttagt-ccctgctct |
7166320 |
T |
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| Q |
318 |
tactttagttagttttgcattgtcctttgcatttgagtttgttagttgtat |
368 |
Q |
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| T |
7166319 |
ttctttagttgattttgtattgtcctttgcatgtgagtttgttagttgtat |
7166269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 518 - 603
Target Start/End: Complemental strand, 7166115 - 7166030
Alignment:
| Q |
518 |
ttgagtctcatttttgacagaagagtatatagcctatccctgttatttgtgaagtctgaaacattccttaatattatacccatatt |
603 |
Q |
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| T |
7166115 |
ttgagtctcatttttgacagaagagtatatagcctatccctgttgtttgtgaagtctgaaacatttcttaatattatacccatatt |
7166030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 440 - 505
Target Start/End: Complemental strand, 7166164 - 7166099
Alignment:
| Q |
440 |
taggccaacatgtatatagcctaataacccgatcaaagattgacttcagttgagactcatttttga |
505 |
Q |
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| T |
7166164 |
taggccaacatatatatagcctaataacctgatcaaagattgacttcagttgagtctcatttttga |
7166099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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