View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11171A_low_30 (Length: 419)
Name: NF11171A_low_30
Description: NF11171A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11171A_low_30 |
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| [»] chr1 (3 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 338; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 5 - 419
Target Start/End: Original strand, 6757740 - 6758154
Alignment:
| Q |
5 |
gactgagatgaacaaatattgtctgagtgatttaaatcttgnnnnnnnncttccataaatnnnnnnntagttgcatttataatttaaatgtccctagagc |
104 |
Q |
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| T |
6757740 |
gactgagttgaacaaatattgtctgagtgatttaaatcttgttttttttcttccataaataaaaaaatagttgcatttataatttaaatgtccctagagc |
6757839 |
T |
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| Q |
105 |
tatgcaagtataatgcagtagattgtcttaggatttggacacatactttagttgttgccttttaaaatatgtctgatcatagttctttggaacactaata |
204 |
Q |
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| T |
6757840 |
tatgcaagtataatgcagtaaattgtcttaggatttggacacatactttagttgttgccttttaaaatatgtctgatcatagttctttggaacactaata |
6757939 |
T |
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| Q |
205 |
tttgctctgaactgctaatatcaggaagctattttttgtaatgccatgatttcttatgtttactaatttggtttgcactgccttccgtgctgtaggtgga |
304 |
Q |
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| T |
6757940 |
tttgctctgaactgctaatatcaggaagctattttttgtaatgtcatgatttcttatgtttactaatttggtttgtactgccttccatgctgtaggtgga |
6758039 |
T |
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| Q |
305 |
agagaaaggattaacttccgagacagcggacagaattggaacttttattaatgaaaaaggacaccctttaacattattacgtagacttaaacaagaaggc |
404 |
Q |
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| T |
6758040 |
agagaagggattaacttccgagacagcggacagaattggaacttttactaatgaaaaaggacactctttaacattattacgtagacttaaacaagaaggc |
6758139 |
T |
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| Q |
405 |
agtgctttcttagaa |
419 |
Q |
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| T |
6758140 |
agtgctttcttagaa |
6758154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 209 - 419
Target Start/End: Complemental strand, 25465110 - 25464900
Alignment:
| Q |
209 |
ctctgaactgctaatatcaggaagctattttttgtaatgccatgatttcttatgtttactaatttggtttgcactgccttccgtgctgtaggtggaagag |
308 |
Q |
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| T |
25465110 |
ctctaaactgttaatatttggaagttatattttgcaacaccgtgatttcttatctttaataatgtggtttttactgactttcatgctgtaggtggaagag |
25465011 |
T |
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| Q |
309 |
aaaggattaacttccgagacagcggacagaattggaacttttattaatgaaaaaggacaccctttaacattattacgtagacttaaacaagaaggcagtg |
408 |
Q |
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| T |
25465010 |
aaaggattaactgctgagacagctgacagaattggaacttttgttaaagagaaaggacatcctttaacattgttatcgaaacttaaacaagaaggcagtg |
25464911 |
T |
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| Q |
409 |
ctttcttagaa |
419 |
Q |
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| T |
25464910 |
ctttcttagaa |
25464900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 292 - 419
Target Start/End: Complemental strand, 25475761 - 25475634
Alignment:
| Q |
292 |
tgctgtaggtggaagagaaaggattaacttccgagacagcggacagaattggaacttttattaatgaaaaaggacaccctttaacattattacgtagact |
391 |
Q |
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| T |
25475761 |
tgctgtaggtggaagagaaaggattaactgttgagacagctgacagaattggaacttttgttagagagaaaggacatcctttaacgttgttagagaagct |
25475662 |
T |
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| Q |
392 |
taaacaagaaggcagtgctttcttagaa |
419 |
Q |
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| T |
25475661 |
taaacaagaaggcagtgctttcttagaa |
25475634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 214 - 419
Target Start/End: Complemental strand, 40087507 - 40087311
Alignment:
| Q |
214 |
aactgctaatatcaggaagctattttttgtaatgccatgatttcttatgtttactaatttggtttgcactgccttccgtgctgtaggtggaagagaaagg |
313 |
Q |
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| T |
40087507 |
aactgttaaaatcaggaagctattttttgtaatgccatgattt----tgt-----aatgtggtttgtactgacttttatgttgtaggtggaagagaaagg |
40087417 |
T |
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| Q |
314 |
attaacttccgagacagcggacagaattggaacttttattaatgaaaaaggacaccctttaacattattacgtagacttaaacaagaaggcagtgctttc |
413 |
Q |
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| T |
40087416 |
attaagtgccgagacagctgacagaatcggaacttttgttaaagaaaaaggacaccctttaacagtattatcaaaactgaaacaagatagcagtcctttc |
40087317 |
T |
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