View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11171A_low_32 (Length: 419)
Name: NF11171A_low_32
Description: NF11171A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11171A_low_32 |
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Alignment Details
Target: chr7 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 7 - 413
Target Start/End: Original strand, 28091271 - 28091679
Alignment:
| Q |
7 |
acaatgaattggaacaaataaatgtcaagaagggaattctagaccatctactacacatttagttgcataccttctgcttttgcctttcattctctatctc |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
28091271 |
acaatgaattggaacaaataaatgtcaagaagggaattctagaccatctactacacatttagttgcataccttctgcttttgcctttcattctctttctc |
28091370 |
T |
|
| Q |
107 |
ctgccttaaggtgttgtagtcttcaaccattgaaagcagtcgagtcttaacacacatccatgaacaaaaaggcataaaaatgtatgaggcataacatcta |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28091371 |
ctgccttaaggtgttgtagtcttcaaccattgaaagcagtcgagtcttaacacacatccatgaacaaaaaggcataaaaatgtatgaggcataacatcta |
28091470 |
T |
|
| Q |
207 |
aggtgttgactttatgagaaaaatgtaatacattatataggaggcctaattcataaaatttgcacagataattctgttaaattcatcaaatttgcacaaa |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28091471 |
aggtgttgactttatgagaaaaatgtaatacattatataggaggcctaattcataaaatttgcacagataattctgttaaattcatcaaatttgcacaaa |
28091570 |
T |
|
| Q |
307 |
tgattctgttaaaattactcactccatcgtacaaaaactctactcctctttcttcct--catgctgcaacttttaaagttaatgcctctaccattcctgt |
404 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
28091571 |
tgattctgttaaaattactcactccatcgtacgaaaactctactgctctttcttcctcccatgctgcaacttttaaagttaatgcctctaccattcctgt |
28091670 |
T |
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| Q |
405 |
tgaaatgat |
413 |
Q |
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| T |
28091671 |
tgaaatgat |
28091679 |
T |
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