View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11171A_low_35 (Length: 417)
Name: NF11171A_low_35
Description: NF11171A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11171A_low_35 |
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Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-122; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 113 - 396
Target Start/End: Original strand, 32314825 - 32315114
Alignment:
| Q |
113 |
aggaattatagattactatgctgtgttattttgtttattaaatggtaagtgaatttcattagtctagagaaattgtacttattgaaaagaggtggtttgt |
212 |
Q |
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| T |
32314825 |
aggaattataggttactaagctgtgttattttgtttattaaatggtaagtgaatttcattagtcttgagaaattgtacttattgaaaagaggtggtttgt |
32314924 |
T |
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| Q |
213 |
tctatcattattttgagtggtaaacttggtacatttcttactctcttcaaatgatatattttgtgccctaaggttgacagtttcttgttcacttgtttat |
312 |
Q |
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| T |
32314925 |
tctatcattattttgagtggtaaacttagtacatttcttactctcttcaaatgatatattttgtgccctaaggttgacagtttctagttcacttgtttat |
32315024 |
T |
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| Q |
313 |
ccagcttgctgatcttgcctact------tcacatgggtatgtatgtcttcatcaactacttttgaattttgttatatcacttcatcctt |
396 |
Q |
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| T |
32315025 |
ccagcttgctgatcttgcctacttcaaaatcacatgggtatgtatgtcttcatcaactgcttttgggttttgttatagtaattcatcctt |
32315114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 286 - 396
Target Start/End: Complemental strand, 32365115 - 32365006
Alignment:
| Q |
286 |
ttgacagtttcttgttcacttgtttatccagcttgctgatcttgcctacttcacatgggtatgtatgtcttcatcaactacttttgaattttgttatatc |
385 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
32365115 |
ttgacattttcttgttcacttgtttatccagcttgctgatcttgcctgcttcacatgggtatgtatgtcttcatcaactacttttgaa-tttgttatatc |
32365017 |
T |
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| Q |
386 |
acttcatcctt |
396 |
Q |
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| T |
32365016 |
aattcatcctt |
32365006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 336 - 371
Target Start/End: Complemental strand, 32308862 - 32308827
Alignment:
| Q |
336 |
tcacatgggtatgtatgtcttcatcaactacttttg |
371 |
Q |
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| T |
32308862 |
tcacatgggtatgtatgtcttcatcaactgcttttg |
32308827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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