View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11171A_low_37 (Length: 410)
Name: NF11171A_low_37
Description: NF11171A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11171A_low_37 |
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Alignment Details
Target: chr5 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 7 - 389
Target Start/End: Original strand, 28298591 - 28298974
Alignment:
| Q |
7 |
acaattcgactcctt---tatttcttcataggtaccagcttactttaatttgcatctcatatatatccttcatattttcattttcagtttggactctttc |
103 |
Q |
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| T |
28298591 |
acaattcgactccttctttatttcttcataggtaccagcttactttcatttgcatctcatatatatccttcatattttcattttcagtttggactgtttc |
28298690 |
T |
|
| Q |
104 |
atatttaagttcctttatgttcctattaccgaacttgtctcacatatccttgctatcaccgctgccaactcacccacctcactgagtcgactcactcaca |
203 |
Q |
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|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
28298691 |
atatttaagttcctttatgttcctgttaccaaacttgtctcacatatccttgctatcaccgctgccaactcgcccacctcactgagtcgactcactcaca |
28298790 |
T |
|
| Q |
204 |
cnnnnnnnnnttcaacaccataacaactcgacttcgcccaactcgctgagtcaactcgcgaacaacaacaaccaaatccaaaatcacagtaactagctaa |
303 |
Q |
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| ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
28298791 |
--aaaaaaaatccaacaccataacaactcgactccgcccaactcgctgagtcaactcgcgcacaacaacaaccaaatccaaaatcacagtaactagctag |
28298888 |
T |
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| Q |
304 |
tcacaaccacaacaattttccatgtgccttagctttgcagattctattcaatcttagaccattttcatgtaactgttcaactgggt |
389 |
Q |
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|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
28298889 |
tcacaaccgcaacaattttccatgtgccttagctttgccgattctattcaatcttagaccattttcatgtgactgttcaactgggt |
28298974 |
T |
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