View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11171A_low_40 (Length: 402)
Name: NF11171A_low_40
Description: NF11171A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11171A_low_40 |
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Alignment Details
Target: chr1 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 17 - 396
Target Start/End: Complemental strand, 7440845 - 7440462
Alignment:
| Q |
17 |
ggtgttacaaacaatatatatagtattactgctatgattcagttaacaatattacctctgatgagccataatacaaccggcccttgccttctttaatgtt |
116 |
Q |
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| T |
7440845 |
ggtgttacaaacaatatatataatattactactatgattcagttaacaatattacctctgatgagccatactactaccgccccttgccttatttaatgtc |
7440746 |
T |
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| Q |
117 |
ttgcatatattaggtatactttaacaacttagaaatcaaaattaaagataatttataacgcttgatttcctcaattcactctagccatt----taacaaa |
212 |
Q |
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| T |
7440745 |
ttgcatatattaggtaaactttaacaacttagaaatcaaaattaaagataatttataacacttgatttcctcaattcactctagccattaatttaacaaa |
7440646 |
T |
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| Q |
213 |
gaagaaaattgtgatgacttataaaggagtcaaagcaatcaatacctaaacatgttttaaatcaaacttgatatcaaaacattggtgctagaaggaggat |
312 |
Q |
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| T |
7440645 |
gaagaaaattgtgatgacttataaaggagtcaaagcaatcaatacctaaacatgttttaaatcaaacttgatatcaaaacattggtgctagaaggaggat |
7440546 |
T |
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| Q |
313 |
tgagggcaaatgaaccttctaacacctaaatatctttgattgtggggtacgattccattacaaaagaaagtctaacagtcttag |
396 |
Q |
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| T |
7440545 |
tgagggcaaatgaaccttttagcacctaaatatctttgattgtggggtacgattccattacaaaagaaagtataacagtcttag |
7440462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 6397803 - 6397845
Alignment:
| Q |
18 |
gtgttacaaacaatatatatagtattactgctatgattcagtt |
60 |
Q |
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| T |
6397803 |
gtgttacaagcaatatatatagtattattactatgattcagtt |
6397845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 36010253 - 36010202
Alignment:
| Q |
19 |
tgttacaaacaatatatatagtattactgctatgattcagttaacaatatta |
70 |
Q |
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| T |
36010253 |
tgttacaaacaatatatataatactacttctacgattcagttcacaatatta |
36010202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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