View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11171A_low_42 (Length: 401)
Name: NF11171A_low_42
Description: NF11171A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11171A_low_42 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 21 - 381
Target Start/End: Complemental strand, 29180134 - 29179775
Alignment:
| Q |
21 |
acttctctgtttttgtagaacactctacacaaaacccaatcttcctgtatatacacaagattatgcaaattattattactctattcatttcaaaacaagt |
120 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29180134 |
acttctctgtttttgtagaacaccctacacaaaacccaatcttcctgtatatacacaagattatgcaaattattattactctattcatttcaaaacaagt |
29180035 |
T |
|
| Q |
121 |
gtcatagattttttgacatagattaagagacacaataaataaataaataagtgtaacaatattataatattgtcttcgtaggaagaggggggacaattgt |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
29180034 |
gtcatagattttttgacatagattaagagacacaataaatgaatgaataagtgtaacaatattataatattgtcttcgtaggaagag-ggggacaattgt |
29179936 |
T |
|
| Q |
221 |
ttcactggtctgaacttagggttaaattggttgaaaatccgattttaaaccacgtaatttaacatgtatggttctattgtaaaactatgacaactcttaa |
320 |
Q |
| |
|
||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
29179935 |
ttcactggtttgaacttagggttaagttggttgaaaatccgattttaaaccacgtaatttaacatgtatgattctattgtaaaactatgacaactcttaa |
29179836 |
T |
|
| Q |
321 |
ttgtaacaaaccccaccacctcatattaggtcatcgaatcaacaactcaaaaccgattgat |
381 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||||||||||| |||||||||| |||||||| |
|
|
| T |
29179835 |
ttgttacaaatcccaccacctcatattaggtcatcgaatcagcaactcaaaatcgattgat |
29179775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University