View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11171A_low_44 (Length: 398)
Name: NF11171A_low_44
Description: NF11171A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11171A_low_44 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 398
Target Start/End: Complemental strand, 16686820 - 16686416
Alignment:
| Q |
1 |
gcgtaaatccttcctgatcttagttttaaatgatttattctattgatcaaatagctaaatataactatattaactgattaactataacaatgctcatata |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16686820 |
gcgtaaatccttccttatcttagttttaaatgatttattctattgatcaaatagctaattataactatattaactgattaactataacaatgctcatata |
16686721 |
T |
|
| Q |
101 |
catattctcactcaccaatattcttcactaatagaatatgcaaagacaaca-aaaatatcatattagtttcattcatggtccattgacataaacatggac |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||| || |
|
|
| T |
16686720 |
catattctcactcaccaatattcttcactaatagaatatgtaaagacaacaaaaaatatcatattagtttcattcatggtccactgacacaaacatgaac |
16686621 |
T |
|
| Q |
200 |
actagacacgacaa------tgacactgacatgtcgacacctgcaataatttgagaaaaatataataaatgtaactaaatatgtcggggtcatttaggtg |
293 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16686620 |
actagacacgacaatgagactgacactgacatgtcgacacctgcaataatttgagaaaaatataataaatgtaactaaatatgtcggggtcatttaggtg |
16686521 |
T |
|
| Q |
294 |
tcaaatatcaatgtgtgtcgaacagtgaaaacactacaatagcatatcccttgaattcaattggagaagatcaatgggtcaatataatactgcattgcat |
393 |
Q |
| |
|
|||||||| || |||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
16686520 |
tcaaatattaacgtgtgtcggacactgaaaatactacaatagcatatcccttgaattcaattggagaagatcaatggatcaatatactactgcattgcat |
16686421 |
T |
|
| Q |
394 |
aaaaa |
398 |
Q |
| |
|
||||| |
|
|
| T |
16686420 |
aaaaa |
16686416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 73; Significance: 3e-33; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 90 - 304
Target Start/End: Original strand, 4584865 - 4585084
Alignment:
| Q |
90 |
atgctcatatacatattctcactcaccaatattcttcactaatagaatatgcaaagacaacaaaaatatcatattagtttcattcatggtccattgacat |
189 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||| ||||| |||| | ||| |
|
|
| T |
4584865 |
atgctcatatacatattctca----ccaatattcttcactagtagaatatgtaaagagaacaaaaatatcatattagtttcagtcatgttccagtcacac |
4584960 |
T |
|
| Q |
190 |
aaacatggacactagaca----------cgacaatgacactgacatgtcgacacctgcaataatttgagaaaaatataataaatgtaactaaatatgtcg |
279 |
Q |
| |
|
||||||||||||||||| ||||| ||||| ||| || | || |||||||||||||||| |||||| |||||||||| ||||| ||| | |
|
|
| T |
4584961 |
caacatggacactagacatgacacgactcgacactgacaatgaaattttgatgcctgcaataatttgag-aaaatagaataaatgtatttaaatgtgttg |
4585059 |
T |
|
| Q |
280 |
gggtcatttaggtgtcaaatatcaa |
304 |
Q |
| |
|
| ||| ||||||||||||||||||| |
|
|
| T |
4585060 |
gagtcgtttaggtgtcaaatatcaa |
4585084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 328 - 398
Target Start/End: Original strand, 4585547 - 4585618
Alignment:
| Q |
328 |
tacaatagcat-atcccttgaattcaattggagaagatcaatgggtcaatataatactgcattgcataaaaa |
398 |
Q |
| |
|
||||||||||| ||||||| |||||| | |||||| |||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
4585547 |
tacaatagcatcatcccttaaattcagtaggagaatatcaatggatcaatataatactacattgcataaaaa |
4585618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 325 - 398
Target Start/End: Original strand, 4570881 - 4570955
Alignment:
| Q |
325 |
cactacaatagcat-atcccttgaattcaattggagaagatcaatgggtcaatataatactgcattgcataaaaa |
398 |
Q |
| |
|
|||||||||||| | ||||||| |||||||| | ||||||||||||| ||||||||||||| |||||||| |||| |
|
|
| T |
4570881 |
cactacaatagcctcatcccttaaattcaatagcagaagatcaatggatcaatataatactacattgcattaaaa |
4570955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 261 - 304
Target Start/End: Original strand, 4570452 - 4570495
Alignment:
| Q |
261 |
aatgtaactaaatatgtcggggtcatttaggtgtcaaatatcaa |
304 |
Q |
| |
|
||||||||||||| | |||||||| ||||||||||||||||||| |
|
|
| T |
4570452 |
aatgtaactaaatgtatcggggtcgtttaggtgtcaaatatcaa |
4570495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 339 - 398
Target Start/End: Complemental strand, 4607099 - 4607040
Alignment:
| Q |
339 |
atcccttgaattcaattggagaagatcaatgggtcaatataatactgcattgcataaaaa |
398 |
Q |
| |
|
||||||| |||||||| ||| ||||||||||| |||| |||||| | ||||||||||||| |
|
|
| T |
4607099 |
atcccttaaattcaataggaaaagatcaatggatcaacataataatacattgcataaaaa |
4607040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 5 - 44
Target Start/End: Complemental strand, 4607433 - 4607394
Alignment:
| Q |
5 |
aaatccttcctgatcttagttttaaatgatttattctatt |
44 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||||||||| |
|
|
| T |
4607433 |
aaatacttccttatcttagttttaaatgatttattctatt |
4607394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 265 - 313
Target Start/End: Original strand, 4556557 - 4556605
Alignment:
| Q |
265 |
taactaaatatgtcggggtcatttaggtgtcaaatatcaatgtgtgtcg |
313 |
Q |
| |
|
||||||||| |||||||||| ||||||| ||||||||||| ||||||| |
|
|
| T |
4556557 |
taactaaatgtgtcggggtcgtttaggtttcaaatatcaacatgtgtcg |
4556605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 190 - 250
Target Start/End: Original strand, 6736451 - 6736511
Alignment:
| Q |
190 |
aaacatggacactagacacgacaatgacactgacatgtcgacacctgcaataatttgagaa |
250 |
Q |
| |
|
||||| |||||||||||| ||||| |||||||||| ||||||||| | ||||||||||||| |
|
|
| T |
6736451 |
aaacacggacactagacatgacaaagacactgacacgtcgacaccggtaataatttgagaa |
6736511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University