View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11171A_low_45 (Length: 398)
Name: NF11171A_low_45
Description: NF11171A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11171A_low_45 |
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Alignment Details
Target: chr8 (Bit Score: 169; Significance: 2e-90; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 16686855 - 16687109
Alignment:
| Q |
1 |
agttctcatctcactcatggccacac------gtgtgtgttgagaccacaaatggattttctagtactatccatgatattaaccacatccatgatcatag |
94 |
Q |
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| T |
16686855 |
agttctcatctcactcatggccacacacacatgtgtgtgttgagaccacaaatggattttctagtactatccatggtattaaccacatccatgatcatag |
16686954 |
T |
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| Q |
95 |
gttgagatcatttatgagaaattagatcgtatgcggtcacaattttacacactcatacagtcagcagttcagagttgttagatgaagattagacgactcc |
194 |
Q |
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| T |
16686955 |
gttgagatcatttatgagaaattagatcgtctgcggtcacaattttatgcactcgtgcagt---cagttcggagttgttagatgaagattggacgactct |
16687051 |
T |
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| Q |
195 |
aattttaagtttgtttttaaaatggattaacatagtttaaaataagattcgtccaatt |
252 |
Q |
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| T |
16687052 |
aattttaaatttacttttaaaatggattcacatagtttaaaataagattcgtccaatt |
16687109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 271 - 396
Target Start/End: Original strand, 16687186 - 16687310
Alignment:
| Q |
271 |
tatggtaaattagtattcgttgctacgtcatggactggtgtgttatataaagaagtgttatgtccatgacgataaaatggaatagaagtgaatttgaata |
370 |
Q |
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| T |
16687186 |
tatggtaaattagtattcgttgctacgtcataaactgatgtgttatataaagaagtgttatgtccataaggat-aaatggaatagaagtgaatttgaata |
16687284 |
T |
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| Q |
371 |
agtgagaggaagagtttttcatgtat |
396 |
Q |
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| T |
16687285 |
agtgagaggaagagtttttcatgtat |
16687310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 42 - 124
Target Start/End: Complemental strand, 4556209 - 4556127
Alignment:
| Q |
42 |
acaaatggattttctagtactatccatgatattaaccacatccatgatcataggttgagatcatttatgagaaattagatcgt |
124 |
Q |
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| T |
4556209 |
acaaatgaattttctagcggtatccatgatattgaccatatccatgatcctaggttgagatcatttatgagaaattagatcgt |
4556127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 172 - 228
Target Start/End: Complemental strand, 4570188 - 4570132
Alignment:
| Q |
172 |
ttagatgaagattagacgactccaattttaagtttgtttttaaaatggattaacata |
228 |
Q |
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| T |
4570188 |
ttagattaacattggacgactccaattttaagtttgcttttaaaatggattcacata |
4570132 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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