View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11171A_low_47 (Length: 387)
Name: NF11171A_low_47
Description: NF11171A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11171A_low_47 |
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| [»] scaffold0288 (1 HSPs) |
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| [»] scaffold0475 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 12 - 381
Target Start/End: Complemental strand, 49330905 - 49330543
Alignment:
| Q |
12 |
agagagtaaatatcagggtcaaaatatgaatccatatagaacaaaatcaaatggaggaatagatacaaaacaacaaatcaacttattcattgatatcctc |
111 |
Q |
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||||||||||||||||||| ||||||| |||||| |||||||| |||| |||||||||||||||||||||||||| ||||||| |||||| |||||| |
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| T |
49330905 |
agagagtaaatatcagggttaaaatatcaatccacgtagaacaatatcacatggaggaatagatacaaaacaacaattcaacttgttcattactatcct- |
49330807 |
T |
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| Q |
112 |
ctagtcaacacatgtgatgtattaattcccttcttgcgaacggcatagtaacataaaccaaacattataattttcctttgtaatttttcgacattgtttt |
211 |
Q |
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| T |
49330806 |
--agttaacacatgtgatgtattacttcccttcttgcgaacgacatactaacataaacctaagattataattttcctttgtaacttttccacactgtttt |
49330709 |
T |
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| Q |
212 |
gctaaattcttcaaataaaaaacagcgaaattgttcagttgagttgcttatattacagcttccccatccaatttggttatcaagtctgtgctacctgctg |
311 |
Q |
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| T |
49330708 |
gctaaattttacatataaaaaacagcgaaattgttcaattgagttgcttatatttcagtttcaccatccaatttgattctcaagtctgtgctacctaccg |
49330609 |
T |
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| Q |
312 |
attcgggaaaaatgtagagcatcacgatttgcttatgattccgctatttcagcttcatcaatttcataga |
381 |
Q |
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| T |
49330608 |
attcggaaaaaatgtagagcatcacgatttgcttctg----tgccattttagcttcatcaatttcataga |
49330543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 122; Significance: 2e-62; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 247 - 380
Target Start/End: Original strand, 4660393 - 4660526
Alignment:
| Q |
247 |
cagttgagttgcttatattacagcttccccatccaatttggttatcaagtctgtgctacctgctgattcgggaaaaatgtagagcatcacgatttgctta |
346 |
Q |
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| T |
4660393 |
cagttgagttgcttatattacaacttccccatccaatttgattatcaagtctgtgctacctgctgattcgggaaaaatgtagagcatcacgatttgctta |
4660492 |
T |
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| Q |
347 |
tgattccgctatttcagcttcatcaatttcatag |
380 |
Q |
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| T |
4660493 |
tgattccgctattttagcttcatcaatttcatag |
4660526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 247 - 377
Target Start/End: Original strand, 20558 - 20688
Alignment:
| Q |
247 |
cagttgagttgcttatattacagcttccccatccaatttggttatcaagtctgtgctacctgctgattcgggaaaaatgtagagcatcacgatttgctta |
346 |
Q |
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|||| ||||||||||||||||| ||||||||||||||||| | |||||||||| || |||| |||||| ||||||||||||||||||| ||||||||||| |
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| T |
20558 |
cagtggagttgcttatattacaacttccccatccaatttgataatcaagtctgggccacctcctgatttgggaaaaatgtagagcatcccgatttgctta |
20657 |
T |
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| Q |
347 |
tgattccgctatttcagcttcatcaatttca |
377 |
Q |
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| T |
20658 |
tgattccgctattttagctttatcaaattca |
20688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0475 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0475
Description:
Target: scaffold0475; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 247 - 327
Target Start/End: Original strand, 7691 - 7771
Alignment:
| Q |
247 |
cagttgagttgcttatattacagcttccccatccaatttggttatcaagtctgtgctacctgctgattcgggaaaaatgta |
327 |
Q |
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|||||||||||||||||||||| ||||||| ||| ||||| |||||||||||||||||||| ||||||| ||||||||||| |
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| T |
7691 |
cagttgagttgcttatattacaacttccccctccgatttgattatcaagtctgtgctacctcctgattcaggaaaaatgta |
7771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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