View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11171A_low_48 (Length: 383)
Name: NF11171A_low_48
Description: NF11171A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11171A_low_48 |
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Alignment Details
Target: chr8 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 363
Target Start/End: Complemental strand, 37975680 - 37975318
Alignment:
| Q |
1 |
agatattatgcacatgcaaaaagctgtgcccgtgttattgcaacaagaaacatgcaggaaaagctaatctataatgtaatgatcgagatgatatggttta |
100 |
Q |
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| T |
37975680 |
agatattatgcacatgcaaaaagctgtgcccgtgttattgcaacaagaaacatgcaggaaaagctaatctataatgtaatgatcgagatggtatggttta |
37975581 |
T |
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| Q |
101 |
tagcttagattagattctgtgctttattaggcacattacaaagttgacnnnnnnnnnnnnnnnnnnnnnntagggactggtggaataattggtgcttaag |
200 |
Q |
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| T |
37975580 |
tggcttagattagattctgtgatttattaggcacattacaaagttgacaaaagaaaagaaaaaagaagaatagggactggtggaataattggtgcttaag |
37975481 |
T |
|
| Q |
201 |
ttcgaagaaaacttattatttctctctctgtctttttgattttgtaatgtaggatagatgaagaaatgttactatgtttttgttagttagtgaaaatgaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37975480 |
ttcgaagaaaacttattatttctctctctgtctttttgattttgtaatgtaggatagatgaagaaatgttactatgtttttgttagttagtgaaaatgaa |
37975381 |
T |
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| Q |
301 |
acataacattgtgtttagggaatctatattggttgaataaagagttggaatccactcaaaatt |
363 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37975380 |
acataacattgtgtttagggaatctatattggttgaataaagagttggaatccactcaaaatt |
37975318 |
T |
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