View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11171A_low_49 (Length: 376)
Name: NF11171A_low_49
Description: NF11171A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11171A_low_49 |
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Alignment Details
Target: chr3 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 6 - 370
Target Start/End: Complemental strand, 31784801 - 31784437
Alignment:
| Q |
6 |
gtttggtgttgtatgcgcctttttagccgtatctgcaagtaaatagggatcatgaagttcattgtcaccaatcaattttcgtttgtttatgaaatttaga |
105 |
Q |
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| T |
31784801 |
gtttgatgttgtatgtgcccttttagccgcatctgcgagtaaatggggatcgtgaagttcattgtcaccaatcaattttcgtttgtttatgaaatttaga |
31784702 |
T |
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| Q |
106 |
ttaggaatgacatttattgaattgttagctacaccagtgcttttgtttctgatgtctctaaccgtatgttcaacttttatcttgatacctccgcccctta |
205 |
Q |
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|||||||||| |||||||||||||||| |||||| |||||| ||||||||||||||||||| ||||||||||||| ||||||||||||||||||| || |
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| T |
31784701 |
ttaggaatgatgtttattgaattgttaggtacaccgatgctttggtttctgatgtctctaaccatatgttcaactttgatcttgatacctccgccccgta |
31784602 |
T |
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| Q |
206 |
cactcattattctttcctcataatagttggaaggttcccttgtttgcatcaaactattttggcaacctgagaaagaaaaaacaaatattgcattgtttac |
305 |
Q |
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|||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |
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| T |
31784601 |
cactcagcattctttcctcagaatagttggaaggttcccttgtttgcatcaaactattttggtaacctgagaaagaaaaaacaaatattgcattgtttgc |
31784502 |
T |
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| Q |
306 |
actaacttctcgtccatgcgagtctgtgatttttcctgtcttggtggcttgagacagactgcttt |
370 |
Q |
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| T |
31784501 |
actaacttctcgtccatgcgagtctgtgatttttcctgtcttgatggcttgagacaaactgcttt |
31784437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 52 - 325
Target Start/End: Original strand, 19631618 - 19631893
Alignment:
| Q |
52 |
ggatcatgaagttcattgtcaccaatcaattttcgtttgtttatgaaatttagattaggaatgacatttattgaattgttagctacaccagtgcttttgt |
151 |
Q |
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| T |
19631618 |
ggatcgtgaagttcattgtcaccaatcaattttcgtttgtttatgaaatttagattaggaatgacatttattgaattgttagctacaccgatgctttggt |
19631717 |
T |
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| Q |
152 |
ttctgatgtctctaaccgtatgttcaacttttatcttgatacctccgccccttacactcattattc--tttcctcataatagttggaaggttcccttgtt |
249 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |
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| T |
19631718 |
ttctgatgtctctaaccatatgttcaacttttatcttgatacctccgccccttacacttattattctttttcctcataatagttggaaggttcccttgtt |
19631817 |
T |
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| Q |
250 |
tgcatcaaactattttggcaacctgagaaagaaaaaacaaatattgcattgtttacactaacttctcgtccatgcg |
325 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |
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| T |
19631818 |
tgcatcaaactattttggcaacctgagaaagaaaaaacaaatagtacattgtttacactaacttctcgtccatgcg |
19631893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 321 - 370
Target Start/End: Original strand, 19633725 - 19633774
Alignment:
| Q |
321 |
atgcgagtctgtgatttttcctgtcttggtggcttgagacagactgcttt |
370 |
Q |
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| T |
19633725 |
atgcgagtctgtgatttttcctgtcttgatggcttgagacaaactgcttt |
19633774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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