View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11171A_low_5 (Length: 493)
Name: NF11171A_low_5
Description: NF11171A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11171A_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 233; Significance: 1e-128; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 3 - 292
Target Start/End: Complemental strand, 33166774 - 33166486
Alignment:
| Q |
3 |
tggctagataattctaaggatgcagttgtacgggggtaaatcaaagagcaaatgttttttggcaaaagaattgcagatggttataatgaacattgtggtc |
102 |
Q |
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| T |
33166774 |
tggctaaatatttctaaggatgcagttgtacaggggtaaatcaaagagcaaatgttttttggcaaaagaattgcagatggttataatgaacattgtggtt |
33166675 |
T |
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| Q |
103 |
atttctttgcaaagggcccagtacaactaaaatctcgatggtcgaaggtgaattccataattaaaaaatttggagggtgctacaagcaagcctatccaag |
202 |
Q |
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| T |
33166674 |
atttccttgcaaagggaccagtacaactaaaatctcgatggtcgaaggtgaattccataattaaaaaatttggagggtgctacaagcaagcctatccaag |
33166575 |
T |
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| Q |
203 |
aagnnnnnnngtggtagcttatagtgatgtcatgggagatgcatattcaatctatactcaatatacacatgaatgtttcatgttagagtt |
292 |
Q |
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| T |
33166574 |
aagaaaaaaagtggtagcttagagtgatgtcatgggagatgcatatt-aatctatactcaatatacacatgaatgtttcatgttagagtt |
33166486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 287 - 487
Target Start/End: Complemental strand, 33161524 - 33161330
Alignment:
| Q |
287 |
agagtttgcgtggagattgttaaaagatgaacctaaatagtcaaaccaatcacttgaaggagctagtaaaagaacaaagacttcggcttctggagcatac |
386 |
Q |
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| T |
33161524 |
agagtttgtgtggagattgttaaaagatgaacctaaatagtcaaaccaatcacttgaaggagctagtaaaagaacaaagacttcggcttctggagcata- |
33161426 |
T |
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| Q |
387 |
tcatcctcatcctcttctaattcgtgcatgccagaaagttacgattacaacccaactgaaaataatctggttcgtccaattgggacaaaaacagcaaaaa |
486 |
Q |
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| T |
33161425 |
-----cccatcctcttctaattcgtgcatgccagaaagttacgattacaacccaactgaaaataatgtggttcgtccaattgggacaaaagcaacaaaaa |
33161331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 285 - 388
Target Start/End: Original strand, 34313183 - 34313286
Alignment:
| Q |
285 |
ttagagtttgcgtggagattgttaaaagatgaacctaaatagtcaaaccaatcacttgaaggagctagtaaaagaacaaagacttcggcttctggagcat |
384 |
Q |
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||||||| ||| ||| ||||||| |||||||||||||||| |||||| |||| |||||| || |||| ||||| |||| ||| ||||| ||||||| |
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| T |
34313183 |
ttagagtatgcatggcgattgttgaaagatgaacctaaatggtcaaatacatcatttgaagtaggcggtaagagaaccaagatttctgcttcaggagcat |
34313282 |
T |
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| Q |
385 |
actc |
388 |
Q |
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|||| |
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| T |
34313283 |
actc |
34313286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 95
Target Start/End: Complemental strand, 49281389 - 49281300
Alignment:
| Q |
3 |
tggctagataattctaaggatgcagttgtacgggggtaaatcaaagagcaaatgttttttggcaaaagaattgcagatggttataatgaacat |
95 |
Q |
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|||||| ||| ||||| ||||||| ||||| ||||||| |||||||||||||| | ||| || ||| |||| || ||||||||||||||||| |
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| T |
49281389 |
tggctaaatatttctacggatgcatttgta--ggggtaattcaaagagcaaatgctctttagc-aaataattacaaatggttataatgaacat |
49281300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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