View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11171A_low_50 (Length: 370)
Name: NF11171A_low_50
Description: NF11171A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11171A_low_50 |
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Alignment Details
Target: chr4 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 359
Target Start/End: Original strand, 24244884 - 24245242
Alignment:
| Q |
1 |
attgtgtctccatctgatacatgattttaaatgtgcctaggagatgacttttctgaatggtttatgtgtttttataggcatgaagcaaatggaacacgag |
100 |
Q |
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| T |
24244884 |
attgtgtctccatctgatacataattttaaatgttcctaggagatgacttttctgaatggtttatttgtttttataggcatgaagcaaatggaacacgag |
24244983 |
T |
|
| Q |
101 |
aaagcgcctatctcagatgcaagatcaatagaggaaactggaatacctatgacaacattgtcattatcctcgcgcaaaaattctgtttgtcgtttttctt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |
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| T |
24244984 |
aaagcgcctatctcagatgcaagatcaatagaggaaactggaatacctatgacaacattgtcactttcctcgcgcaaaaattctgtttgtcgtttttctt |
24245083 |
T |
|
| Q |
201 |
cgaaggaaaagagtgttggagcgtcgaatgagtccgcgaagaaactttctttactaatagttttctatgctattgttatgattgttgaatttgttggggg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24245084 |
cgaaggaaaagagtgttggagcgtcgaatgagtccgcgaagaaactttctttactaatagttttctatgctattgttatgattgttgaatttgttggggg |
24245183 |
T |
|
| Q |
301 |
tttgaaagctcacagcttatctgttatcagtgatgctgcacatttgctttctgatattg |
359 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
24245184 |
tttgaaagctcacagcttatctgttattagtgatgctgcacatttgctttctgatattg |
24245242 |
T |
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