View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11171A_low_55 (Length: 362)
Name: NF11171A_low_55
Description: NF11171A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11171A_low_55 |
 | |
|
| [»] chr8 (6 HSPs) |
| |
|
| [»] scaffold1176 (1 HSPs) |
| | |
|
| [»] scaffold1118 (1 HSPs) |
| | |
|
| [»] scaffold0517 (1 HSPs) |
| | |
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Alignment Details
Target: chr8 (Bit Score: 317; Significance: 1e-179; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 9 - 362
Target Start/End: Complemental strand, 44690310 - 44689957
Alignment:
| Q |
9 |
aattcgatgattacgttttttaatttcatcctatgtaaatatttgtttttggttttagtccctcgaataacatcacttatcatctctcatgccacataag |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44690310 |
aattcgatgattacgttttttaatttcatcctatgtaaatatttgtttttggttttagtccctcgaataacatcacttatcatctctcatgccacataag |
44690211 |
T |
|
| Q |
109 |
catgttttgccaactcaacaagtgacacgtatgcctctgttagccagcacaacattttttaacggaagatgacgttagggaccaattccaaaaagttaac |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44690210 |
catgttttgccaactcaacaagtgacacgtatgcctctgttagccagcacaacattttttaacggaagatgacgttagggaccaattccaaaaagttaac |
44690111 |
T |
|
| Q |
209 |
aagatacaagggctgttttgcaacnnnnnnngatacatggactaaaagcaaaaatagtccaacttactaggaccttttacatatttaagccattatataa |
308 |
Q |
| |
|
||||||||||||||||||| |||| |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44690110 |
aagatacaagggctgttttacaacaaaaaaagatacagggattaaaagcaaaaatagtccaacttactaggaccttttacatatttaagccattatataa |
44690011 |
T |
|
| Q |
309 |
ctatttaatatttctaataattacctcaacaatatattttggccagattgatgt |
362 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
44690010 |
ctatttaatatttctaataattacctcaacaatatattttggccggattgatgt |
44689957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 300 - 362
Target Start/End: Complemental strand, 44680754 - 44680692
Alignment:
| Q |
300 |
attatataactatttaatatttctaataattacctcaacaatatattttggccagattgatgt |
362 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||| |||||||||||| |||||||| |
|
|
| T |
44680754 |
attatataactatttaatattcctaataattacctcaacactatattttggccgcattgatgt |
44680692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 9 - 125
Target Start/End: Original strand, 27411007 - 27411124
Alignment:
| Q |
9 |
aattcgatgattacgttttttaatttcatcc-tatgtaaatatttgtttttggttttagtccctcgaataacatcacttatcatctctcatgccacataa |
107 |
Q |
| |
|
|||| |||| ||| ||||||||||||||||| ||||||||| | ||||||| |||||||||| | | ||||| ||||||||||||||||||||| | | |
|
|
| T |
27411007 |
aatttgatgtttaggttttttaatttcatccctatgtaaatttgtgtttttagttttagtccttgtattaacactacttatcatctctcatgccacttca |
27411106 |
T |
|
| Q |
108 |
gcatgttttgccaactca |
125 |
Q |
| |
|
|| ||||||||||||| |
|
|
| T |
27411107 |
tcaacttttgccaactca |
27411124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 25 - 125
Target Start/End: Original strand, 37964431 - 37964532
Alignment:
| Q |
25 |
tttttaatttcatcc-tatgtaaatatttgtttttggttttagtccctcgaataacatcacttatcatctctcatgccacataagcatgttttgccaact |
123 |
Q |
| |
|
|||||| |||||||| ||||||||| || ||||||||||||||||||| | ||||| |||||| |||||||||||||| | |||| ||||||||||| |
|
|
| T |
37964431 |
tttttattttcatccctatgtaaattttcgtttttggttttagtccctgtattaacactacttatgatctctcatgccacctcagcaacttttgccaact |
37964530 |
T |
|
| Q |
124 |
ca |
125 |
Q |
| |
|
|| |
|
|
| T |
37964531 |
ca |
37964532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 38 - 125
Target Start/End: Complemental strand, 27410025 - 27409938
Alignment:
| Q |
38 |
cctatgtaaatatttgtttttggttttagtccctcgaataacatcacttatcatctctcatgccacataagcatgttttgccaactca |
125 |
Q |
| |
|
||||||||||| || ||||||||||| ||||||| | ||||| |||||| |||||||||||||| | |||| ||||||||||||| |
|
|
| T |
27410025 |
cctatgtaaattttcgtttttggtttaagtccctgtattaacactacttatgatctctcatgccacctcagcaacttttgccaactca |
27409938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 163 - 231
Target Start/End: Complemental strand, 45447142 - 45447074
Alignment:
| Q |
163 |
ttttttaacggaagatgacgttagggaccaattccaaaaagttaacaagatacaagggctgttttgcaa |
231 |
Q |
| |
|
|||||||||||| | ||||| |||||| |||| ||||||||||| || ||||||||| ||||| |||| |
|
|
| T |
45447142 |
ttttttaacggatggtgacggcagggacgaatttcaaaaagttaagaaaatacaagggttgtttcgcaa |
45447074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 141; Significance: 7e-74; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 9 - 220
Target Start/End: Original strand, 31559325 - 31559537
Alignment:
| Q |
9 |
aattcgatgattacgttttttaatttcatcc-tatgtaaatatttgtttttggttttagtccctcgaataacatcacttatcatctctcatgccacataa |
107 |
Q |
| |
|
|||||||||||||||| |||||||||||||| |||||||||||| ||||||||||||||||| | ||| ||| |||||||||||||||||||||||||| |
|
|
| T |
31559325 |
aattcgatgattacgtgttttaatttcatccctatgtaaatattcgtttttggttttagtccttgtaatcacaacacttatcatctctcatgccacataa |
31559424 |
T |
|
| Q |
108 |
gcatgttttgccaactcaacaagtgacacgtatgcctctgttagccagcacaacattttttaacggaagatgacgttagggaccaattccaaaaagttaa |
207 |
Q |
| |
|
| ||||||||||||||| ||||||||| || |||||| ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
31559425 |
acgtgttttgccaactcatcaagtgacatgtgtgcctccgttagccagcacaactttttttaacggaagttgacgttagggaccaattccaaaaagttaa |
31559524 |
T |
|
| Q |
208 |
caagatacaaggg |
220 |
Q |
| |
|
|||||||||||| |
|
|
| T |
31559525 |
gaagatacaaggg |
31559537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 24 - 232
Target Start/End: Original strand, 9262677 - 9262885
Alignment:
| Q |
24 |
ttttttaatttcatcctatgtaaatatttgtttttggttttagtccctcgaataacatcacttatcatctctcatgccacataagcatgttttgccaact |
123 |
Q |
| |
|
|||||||||||||||| || || | || ||||||||||||||||||| ||| | | |||||||||||||||| ||||||||| ||||||||||||| |
|
|
| T |
9262677 |
ttttttaatttcatcccttgcaatttttcttttttggttttagtccctctaatcataacacttatcatctctcacgccacataactgtgttttgccaact |
9262776 |
T |
|
| Q |
124 |
caacaagtgacacgtatgcctctgttagccagcacaacattttttaacggaagatgacgttagggaccaattccaaaaagttaacaagatacaagggctg |
223 |
Q |
| |
|
|| |||||||||||| | ||| ||||||||||||||| |||||||| ||||| ||||||||||||||||||||| |||| ||||||||||||||| || |
|
|
| T |
9262777 |
cagtaagtgacacgtaagtctccgttagccagcacaactttttttaatggaagttgacgttagggaccaattccataaagataacaagatacaaggattg |
9262876 |
T |
|
| Q |
224 |
ttttgcaac |
232 |
Q |
| |
|
||| ||||| |
|
|
| T |
9262877 |
tttcgcaac |
9262885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 54 - 226
Target Start/End: Complemental strand, 31558195 - 31558022
Alignment:
| Q |
54 |
tttttggttttagtccctcgaataacatcacttatcatctctcatgccacataagcatgttttgccaactcaacaagtgacacgtatgcctctgttagcc |
153 |
Q |
| |
|
||||||||||| ||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||||| |
|
|
| T |
31558195 |
tttttggttttggtccctcaaatctagtcacttattatctctcatgccacataagcatgttttgccaactcaacaagtgacacatgcgcctctattagcc |
31558096 |
T |
|
| Q |
154 |
agcacaac-attttttaacggaagatgacgttagggaccaattccaaaaagttaacaagatacaagggctgttt |
226 |
Q |
| |
|
| || ||| ||||||||| |||| ||||||||||| |||||| |||||||||||||||||||||||| ||||| |
|
|
| T |
31558095 |
aacaaaacttttttttaacagaagttgacgttaggggccaatttcaaaaagttaacaagatacaagggttgttt |
31558022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 56 - 210
Target Start/End: Complemental strand, 7317634 - 7317479
Alignment:
| Q |
56 |
tttggttttagtccctcgaataacatcacttatcatctctcatgccacataagcatgttttgccaactcaacaagtgacacgtatgcctctgttagccag |
155 |
Q |
| |
|
||||||||||||| ||| ||| | |||| ||||||||| ||| ||||||||||||||||||| | ||| |||||||||| |||||| ||| |||| |
|
|
| T |
7317634 |
tttggttttagtctctcaaatcatatcagttatcatctgtcaggccacataagcatgttttgttatgtcagtgagtgacacgtgtgcctccgtttgccaa |
7317535 |
T |
|
| Q |
156 |
cacaacattt-tttaacggaagatgacgttagggaccaattccaaaaagttaacaa |
210 |
Q |
| |
|
|| | | ||| | |||| |||| | || ||||||||||| ||||||||||||||| |
|
|
| T |
7317534 |
caaagcgtttatgtaacagaagttaacattagggaccaaaaccaaaaagttaacaa |
7317479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 53 - 116
Target Start/End: Complemental strand, 22053371 - 22053308
Alignment:
| Q |
53 |
gtttttggttttagtccctcgaataacatcacttatcatctctcatgccacataagcatgtttt |
116 |
Q |
| |
|
|||||||||||| ||||||| ||| | |||||||||||| | ||| ||||||||||| |||||| |
|
|
| T |
22053371 |
gtttttggttttggtccctcaaatcatatcacttatcatttgtcaggccacataagcgtgtttt |
22053308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 53 - 120
Target Start/End: Original strand, 22060291 - 22060358
Alignment:
| Q |
53 |
gtttttggttttagtccctcgaataacatcacttatcatctctcatgccacataagcatgttttgcca |
120 |
Q |
| |
|
||||||| |||| ||||||| ||| | |||||||||||| | ||| ||| |||||||||||||||||| |
|
|
| T |
22060291 |
gtttttgattttcgtccctcaaatcatatcacttatcatatgtcaggccccataagcatgttttgcca |
22060358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 72
Target Start/End: Complemental strand, 40127506 - 40127442
Alignment:
| Q |
9 |
aattcgatgattacgttttttaatttcatcc-tatgtaaatatttgtttttggttttagtccctc |
72 |
Q |
| |
|
|||| |||| |||| |||||||| ||||||| ||||| ||| || |||||||||||||||||||| |
|
|
| T |
40127506 |
aatttgatgtttactttttttaaattcatccctatgtcaattttcgtttttggttttagtccctc |
40127442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 72
Target Start/End: Original strand, 43517865 - 43517929
Alignment:
| Q |
9 |
aattcgatgattacgttttttaatttcatcc-tatgtaaatatttgtttttggttttagtccctc |
72 |
Q |
| |
|
|||| |||| |||| |||||||| ||||||| ||||| ||| || |||||||||||||||||||| |
|
|
| T |
43517865 |
aatttgatgtttactttttttaaattcatccctatgtcaattttcgtttttggttttagtccctc |
43517929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 112; Significance: 1e-56; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 9 - 299
Target Start/End: Original strand, 9419588 - 9419877
Alignment:
| Q |
9 |
aattcgatgattacgttttttaatttcatcc-tatgtaaatatttgtttttggttttagtccctcgaataacatcacttatcatctctcatgccacataa |
107 |
Q |
| |
|
|||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||| ||| ||| |||||||||| | ||||||||||||| |
|
|
| T |
9419588 |
aatttgatgattacgttttttaatttcatccctatgtaaatattcgtttttggttttattccctctaatcacaacacttatcatatttcatgccacataa |
9419687 |
T |
|
| Q |
108 |
gcatgttttgccaactcaacaagtgacacgtatgcctctgttagccagcacaacat-tttttaacggaagatgacgttagggaccaattccaaaaagtta |
206 |
Q |
| |
|
|| ||||||||||||||| |||||||| || ||||| ||||||| ||||||| | ||||||||||||| | | ||| |||||||||| | |||||||| |
|
|
| T |
9419688 |
gcgtgttttgccaactcagaaagtgacatgtgtgccttcgttagccggcacaacttatttttaacggaagttaatgtttgggaccaatttctaaaagtta |
9419787 |
T |
|
| Q |
207 |
acaagatacaagggctgttttgcaacnnnnnnngatacatggactaaaagcaaaaatagtccaacttactaggaccttttacatatttaagcc |
299 |
Q |
| |
|
||||||| |||||| ||||| || | |||| |||||||||||||||| | ||||||||| ||||||||||||||||||||||| |
|
|
| T |
9419788 |
acaagatccaagggttgtttcgcca---aaaaaaatactcggactaaaagcaaaaacacgccaacttacaaggaccttttacatatttaagcc |
9419877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 14 - 299
Target Start/End: Complemental strand, 28361059 - 28360769
Alignment:
| Q |
14 |
gatgattacgtttttt-aatttcatcc-tatgtaaatatttgtttttggttttagtccctcgaataacatcacttatcatctctcatgccacataagcat |
111 |
Q |
| |
|
|||| ||||||||||| |||||||||| ||||||| | | |||||||| |||| || |||| ||| |||||||||||||| ||||||||||||| | |
|
|
| T |
28361059 |
gatgtttacgttttttcaatttcatccctatgtaattttgtgtttttgattttggttcctcaaatctagtcacttatcatctcgcatgccacataagtgt |
28360960 |
T |
|
| Q |
112 |
gttttgccaactcaacaagtgacacgtatgcctctgttagccagcacaacatttttt----aacggaagatgacgttagggaccaattccaaaaagttaa |
207 |
Q |
| |
|
|||| ||| ||| | ||||||||||| |||||| ||| | ||||||| | |||||| ||| ||| |||||||||||| ||||||||||||||||| |
|
|
| T |
28360959 |
gttt-gcctacttagcaagtgacacgggtgcctccgtttgtcagcacatctttttttttttaactgaacctgacgttagggaacaattccaaaaagttaa |
28360861 |
T |
|
| Q |
208 |
caagatacaagggctgttttgcaacnnnnnnngatacatggactaaaagcaaaaatagtccaacttactaggaccttttacatatttaagcc |
299 |
Q |
| |
|
|||||||||| | ||||| ||||| |||||| ||||||||| ||||| | ||||||||| ||||||||| ||||||||||||| |
|
|
| T |
28360860 |
gaagatacaagagttgtttcgcaacaaaaaaagatacaaggactaaaaccaaaagtgcgccaacttacaaggacctttaacatatttaagcc |
28360769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 9 - 102
Target Start/End: Complemental strand, 27524560 - 27524466
Alignment:
| Q |
9 |
aattcgatgattacgttttttaatttcatcc-tatgtaaatatttgtttttggttttagtccctcgaataacatcacttatcatctctcatgcca |
102 |
Q |
| |
|
|||| |||| |||||||||| |||||||||| ||||||||| | |||||||||||||||||||| | ||||| |||||||||||||||||||| |
|
|
| T |
27524560 |
aatttgatgtttacgtttttaaatttcatccctatgtaaatttgtgtttttggttttagtccctgtactaacactacttatcatctctcatgcca |
27524466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 24 - 125
Target Start/End: Original strand, 28253417 - 28253519
Alignment:
| Q |
24 |
ttttttaatttcatcc-tatgtaaatatttgtttttggttttagtccctcgaataacatcacttatcatctctcatgccacataagcatgttttgccaac |
122 |
Q |
| |
|
|||||||||||||||| ||||||||| | ||||||| |||||||||||| | ||||| |||||||||||||||||||| | |||| |||||||||| |
|
|
| T |
28253417 |
ttttttaatttcatccctatgtaaatttacgtttttgattttagtccctctactaacactacttatcatctctcatgccatctcagcaaattttgccaac |
28253516 |
T |
|
| Q |
123 |
tca |
125 |
Q |
| |
|
||| |
|
|
| T |
28253517 |
tca |
28253519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 9 - 94
Target Start/End: Complemental strand, 37401293 - 37401206
Alignment:
| Q |
9 |
aattcgatgattacgttttttaatttcatcc-tatgtaaatatttgttttt-ggttttagtccctcgaataacatcacttatcatctc |
94 |
Q |
| |
|
|||| |||| |||| |||||||| ||||||| ||||||||| | ||||||| ||||||||||||| | |||||| |||||||||||| |
|
|
| T |
37401293 |
aatttgatgtttaccttttttaacttcatccctatgtaaatttgtgttttttggttttagtccctgtactaacattacttatcatctc |
37401206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 43882309 - 43882243
Alignment:
| Q |
14 |
gatgattacgttttttaatttcatc-ctatgtaaatatttgtttttggttttagtccctcgaataac |
79 |
Q |
| |
|
|||||||| |||||||| || | || |||||||||| || |||||||||||||||||||| |||||| |
|
|
| T |
43882309 |
gatgattatgttttttatttccgtctctatgtaaattttcgtttttggttttagtccctctaataac |
43882243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 232
Target Start/End: Original strand, 46605845 - 46605914
Alignment:
| Q |
163 |
ttttttaacggaagatgacgttagggaccaattccaaaaagttaacaagatacaagggctgttttgcaac |
232 |
Q |
| |
|
|||||||||||| | ||||| |||||| |||| ||||||||||| || ||||||||| ||||| ||||| |
|
|
| T |
46605845 |
ttttttaacggatggtgacggcagggacgaatttcaaaaagttaagaaaatacaagggttgtttcgcaac |
46605914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 93; Significance: 3e-45; HSPs: 19)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 81 - 232
Target Start/End: Complemental strand, 33551802 - 33551650
Alignment:
| Q |
81 |
tcacttatcatctctcatgccacataagcatgttttgccaactcaacaagtgacacgtatgcctctgttagccagcacaacattttttaa-cggaagatg |
179 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||| ||||| ||||||||| || |||||| |||| |||||||||| |||||||| ||||| || |
|
|
| T |
33551802 |
tcacttatcatctctcatgccacataagcgtgttttgccgactcagcaagtgacatgtgtgcctccgttaaccagcacaactttttttaagcggaacctg |
33551703 |
T |
|
| Q |
180 |
acgttagggaccaattccaaaaagttaacaagatacaagggctgttttgcaac |
232 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
33551702 |
acgttagggatcaattccaaaaagttaagaagatacaagggctgtttcgcaac |
33551650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 9 - 207
Target Start/End: Complemental strand, 34594521 - 34594321
Alignment:
| Q |
9 |
aattcgatgattacgttttttaatttcatcc-tatgtaaatatttgtttttggttttagtccctcgaataacatcacttatcatctctcatgccacataa |
107 |
Q |
| |
|
||||| ||||||| ||||||||||||||||| ||||||||| | |||||||||||||||||||| ||| ||| || ||||| ||||||||| ||| ||| |
|
|
| T |
34594521 |
aattcaatgattatgttttttaatttcatccctatgtaaatttccgtttttggttttagtccctctaatcacaacaattatcgtctctcatgtcacgtaa |
34594422 |
T |
|
| Q |
108 |
gcatgttttgccaactcaacaagtgacacgtatgcctctgttagccagcacaac-attttttaacggaagatgacgttagggaccaattccaaaaagtta |
206 |
Q |
| |
|
|| | | ||| ||||| ||||||||||| || |||||||||||| || |||||| |||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
34594421 |
gcgtatcttgacaacttaacaagtgacatgtgtgcctctgttagacaacacaacttttttttaacggaagattacgttagggaccaattccaaaaagtta |
34594322 |
T |
|
| Q |
207 |
a |
207 |
Q |
| |
|
| |
|
|
| T |
34594321 |
a |
34594321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 54 - 232
Target Start/End: Original strand, 34595590 - 34595769
Alignment:
| Q |
54 |
tttttggttttagtccctcgaataacatcacttatcatctctcatgccacataagcatgttttgccaactcaacaagtgacacgtatgcctctgttagcc |
153 |
Q |
| |
|
||||||||||||||||||| ||| ||| |||||| ||||| ||||||||||||||| ||||||||||||||| ||||||| | | |||||||||||||| |
|
|
| T |
34595590 |
tttttggttttagtccctctaatcacaacacttaccatctttcatgccacataagcgtgttttgccaactcagcaagtgatatgcgtgcctctgttagcc |
34595689 |
T |
|
| Q |
154 |
agcacaacat-tttttaacggaagatgacgttagggaccaattccaaaaagttaacaagatacaagggctgttttgcaac |
232 |
Q |
| |
|
| |||| ||| ||||||||| ||| ||| |||||||||||||| ||||| |||||||||||||||||| ||||| ||||| |
|
|
| T |
34595690 |
atcacaccatctttttaacgaaagttgatgttagggaccaatttcaaaaggttaacaagatacaagggttgtttcgcaac |
34595769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 53 - 231
Target Start/End: Complemental strand, 32641325 - 32641146
Alignment:
| Q |
53 |
gtttttggttttagtccctcgaataacatcacttatcatctctcatgccacataagcatgttttgccaactcaacaagtgacacgtatgcctctgttagc |
152 |
Q |
| |
|
||||||| |||| ||||||| ||| ||||||||| |||| ||||||||||||| | ||||||| || ||||||||||| || || ||||||||||||| |
|
|
| T |
32641325 |
gtttttgattttggtccctcaaatctaatcacttattatctttcatgccacataaacgtgttttgtcagctcaacaagtggcatgtgtgcctctgttagc |
32641226 |
T |
|
| Q |
153 |
cagcacaac-attttttaacggaagatgacgttagggaccaattccaaaaagttaacaagatacaagggctgttttgcaa |
231 |
Q |
| |
|
|||||||| |||||||||| || | || ||| ||||||||||||||| ||||| |||||| | ||| ||||| |||| |
|
|
| T |
32641225 |
tagcacaacttttttttaacgaaacctaacattaaggaccaattccaaaatgttaagaagatataggggttgtttcgcaa |
32641146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 122 - 231
Target Start/End: Complemental strand, 26537592 - 26537482
Alignment:
| Q |
122 |
ctcaacaagtgacacgtatgcctctgttagccagcacaacatttttt-aacggaagatgacgttagggaccaattccaaaaagttaacaagatacaaggg |
220 |
Q |
| |
|
|||| ||||||||| || |||||| ||| |||| || ||| |||||| || ||||| |||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
26537592 |
ctcatcaagtgacatgtgtgcctccgttggccatcaaaacttttttttaatggaagttgacgttagggaccaattccaaaaagttaagaagatacaaggg |
26537493 |
T |
|
| Q |
221 |
ctgttttgcaa |
231 |
Q |
| |
|
||||| |||| |
|
|
| T |
26537492 |
ttgtttcgcaa |
26537482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 15 - 138
Target Start/End: Complemental strand, 27661384 - 27661259
Alignment:
| Q |
15 |
atgattacgttt-tttaatttcatcc-tatgtaaatatttgtttttggttttagtccctcgaataacatcacttatcatctctcatgccacataagcatg |
112 |
Q |
| |
|
|||||||| ||| |||||||||| || ||||||||||| |||| || ||||||||||||| | ||||| || || |||||||||||||||||||||| || |
|
|
| T |
27661384 |
atgattacatttctttaatttcacccctatgtaaatatgtgttatttgttttagtccctctactaacaccagttgtcatctctcatgccacataagcgtg |
27661285 |
T |
|
| Q |
113 |
ttttgccaactcaacaagtgacacgt |
138 |
Q |
| |
|
|||| ||| |||| ||| || ||||| |
|
|
| T |
27661284 |
tttttccatctcatcaattgtcacgt |
27661259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 9 - 103
Target Start/End: Complemental strand, 27329115 - 27329020
Alignment:
| Q |
9 |
aattcgatgattacgttttttaatttcatcc-tatgtaaatatttgtttttggttttagtccctcgaataacatcacttatcatctctcatgccac |
103 |
Q |
| |
|
|||| |||| ||| ||||||||||||||||| ||||||||| | |||||||||||||||||| | | ||||| ||||||||||||||||||||| |
|
|
| T |
27329115 |
aatttgatgtttaggttttttaatttcatccctatgtaaatttgtgtttttggttttagtccttgtattaacactacttatcatctctcatgccac |
27329020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 9 - 94
Target Start/End: Complemental strand, 26537676 - 26537590
Alignment:
| Q |
9 |
aattcgatgattacgttttttaatttcatcc-tatgtaaatatttgtttttggttttagtccctcgaataacatcacttatcatctc |
94 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||| ||||||| |||||||| |||||||||||| | ||||| || || ||||||| |
|
|
| T |
26537676 |
aatttgatgattacgttttttaatttcatccttatttaaatatgtgtttttgattttagtccctctactaacaccaattgtcatctc |
26537590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 300 - 362
Target Start/End: Original strand, 41983565 - 41983627
Alignment:
| Q |
300 |
attatataactatttaatatttctaataattacctcaacaatatattttggccagattgatgt |
362 |
Q |
| |
|
||||||| ||||||||| ||| ||||||||||| |||||||||||||||||||||||| |||| |
|
|
| T |
41983565 |
attatatgactatttaagattcctaataattacatcaacaatatattttggccagattaatgt |
41983627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 20 - 125
Target Start/End: Original strand, 27320474 - 27320580
Alignment:
| Q |
20 |
tacgttttttaatttcatcc-tatgtaaatatttgtttttggttttagtccctcgaataacatcacttatcatctctcatgccacataagcatgttttgc |
118 |
Q |
| |
|
||||||||||| |||||||| ||||||||| || ||||||| ||||||||||| | ||||| |||||| |||||||||||||| | | || |||||| |
|
|
| T |
27320474 |
tacgttttttattttcatccctatgtaaattttcgtttttgattttagtccctgtattaacactacttatgatctctcatgccacctcaacaacttttgc |
27320573 |
T |
|
| Q |
119 |
caactca |
125 |
Q |
| |
|
||||||| |
|
|
| T |
27320574 |
caactca |
27320580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 1677238 - 1677172
Alignment:
| Q |
14 |
gatgattacgttttttaatttcatcc-tatgtaaatatttgtttttggttttagtccctcgaataac |
79 |
Q |
| |
|
||||||||||||||||| |||| ||| ||||||||| | |||||||||||||||||||| |||||| |
|
|
| T |
1677238 |
gatgattacgttttttattttcgtccctatgtaaatttgcgtttttggttttagtccctctaataac |
1677172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 72
Target Start/End: Complemental strand, 39870710 - 39870651
Alignment:
| Q |
14 |
gatgattacgttttttaatttcat-cctatgtaaatatttgtttttggttttagtccctc |
72 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||| || ||||||| |||||||||||| |
|
|
| T |
39870710 |
gatgattacgttttttaattacatccctatgtaaaaatacgtttttgattttagtccctc |
39870651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 3026684 - 3026733
Alignment:
| Q |
24 |
ttttttaatttcatcc-tatgtaaatatttgtttttggttttagtccctc |
72 |
Q |
| |
|
|||||||||| ||||| |||||||| || ||||||||||||||||||||| |
|
|
| T |
3026684 |
ttttttaattacatccctatgtaaaaatatgtttttggttttagtccctc |
3026733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 39871948 - 39871997
Alignment:
| Q |
24 |
ttttttaatttcatcc-tatgtaaatatttgtttttggttttagtccctc |
72 |
Q |
| |
|
|||||||||| ||||| |||||||| || ||||||||||||||||||||| |
|
|
| T |
39871948 |
ttttttaattacatccctatgtaaaaatatgtttttggttttagtccctc |
39871997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 301
Target Start/End: Complemental strand, 55196633 - 55196572
Alignment:
| Q |
240 |
gatacatggactaaaagcaaaaatagtccaacttactaggaccttttacatatttaagccat |
301 |
Q |
| |
|
|||||||||||||||| ||||||| | ||||||| |||||||||| | |||||||||||| |
|
|
| T |
55196633 |
gatacatggactaaaaccaaaaatgcgcgaacttacaaggacctttttcttatttaagccat |
55196572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 67
Target Start/End: Complemental strand, 26300796 - 26300752
Alignment:
| Q |
24 |
ttttttaatttcatcc-tatgtaaatatttgtttttggttttagt |
67 |
Q |
| |
|
||||| |||||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
26300796 |
tttttcaatttcatccctatgcaaatatttgtttttggttttagt |
26300752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 27662423 - 27662471
Alignment:
| Q |
24 |
ttttttaatttcatcctatgtaaatatttgtttttggttttagtccctc |
72 |
Q |
| |
|
|||||||||||| |||| ||||||||| |||||| ||||||||||||| |
|
|
| T |
27662423 |
ttttttaatttcgtcctctgtaaatatgcgtttttagttttagtccctc |
27662471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 72
Target Start/End: Original strand, 31200734 - 31200798
Alignment:
| Q |
9 |
aattcgatgattacgttttttaatttcat-cctatgtaaatatttgtttttggttttagtccctc |
72 |
Q |
| |
|
|||| |||| |||| ||||| || ||||| ||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
31200734 |
aatttgatgtttacttttttaaaattcatgcctatgtcaatttttgtttttggttttagtccctc |
31200798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 308
Target Start/End: Complemental strand, 32613910 - 32613874
Alignment:
| Q |
272 |
ttactaggaccttttacatatttaagccattatataa |
308 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
32613910 |
ttacaaggaccttttacatatttaagccattaaataa |
32613874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 91; Significance: 5e-44; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 57 - 230
Target Start/End: Complemental strand, 20207920 - 20207746
Alignment:
| Q |
57 |
ttggttttagtccctcgaataacatcacttatcatctctcatgccacataagcatgttttgccaactcaacaagtgacacgtatgcctctgttagccagc |
156 |
Q |
| |
|
|||||||||||||||| ||| ||| |||||||||| ||||||| |||||||| ||||||||||||||| |||||||||||| || || |||||||||| |
|
|
| T |
20207920 |
ttggttttagtccctctaatcacaatacttatcatcgctcatgcgacataagcgtgttttgccaactcagcaagtgacacgtttgtttccgttagccagc |
20207821 |
T |
|
| Q |
157 |
acaacat-tttttaacggaagatgacgttagggaccaattccaaaaagttaacaagatacaagggctgttttgca |
230 |
Q |
| |
|
||||| | ||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||| |||||||| |
|
|
| T |
20207820 |
acaacttatttttaacggaagttgacgttagggaccaattttaaaaagttaacaagatataagggtcgttttgca |
20207746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 163 - 300
Target Start/End: Original strand, 20208387 - 20208524
Alignment:
| Q |
163 |
ttttttaacggaagatgacgttagggaccaattccaaaaagttaacaagatacaagggctgttttgcaacnnnnnnngatacatggactaaaagcaaaaa |
262 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| |||||| |||||||||| ||||| ||||| |||| | |||||||||||||||| |
|
|
| T |
20208387 |
ttttttaacggaagttgacgttagggaccaattccaaaaatttaacatgatacaagggttgtttcgcaactaaaaaagatagagggactaaaagcaaaaa |
20208486 |
T |
|
| Q |
263 |
tagtccaacttactaggaccttttacatatttaagcca |
300 |
Q |
| |
|
| ||||||||| ||| ||||||||||||||||||| |
|
|
| T |
20208487 |
cacaccaacttacagggatcttttacatatttaagcca |
20208524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 219
Target Start/End: Complemental strand, 5974301 - 5974245
Alignment:
| Q |
163 |
ttttttaacggaagatgacgttagggaccaattccaaaaagttaacaagatacaagg |
219 |
Q |
| |
|
|||| ||||||||| ||| |||| ||||||||| ||||||||||| ||||||||||| |
|
|
| T |
5974301 |
ttttgtaacggaagttgatgttatggaccaatttcaaaaagttaagaagatacaagg |
5974245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 72
Target Start/End: Original strand, 19639766 - 19639830
Alignment:
| Q |
9 |
aattcgatgattacgttttttaatttcat-cctatgtaaatatttgtttttggttttagtccctc |
72 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||||||||| || |||||| |||||| |||||| |
|
|
| T |
19639766 |
aatttgatgattacgttttttaatttcatccctatgtaaacatgcgttttttgttttaatccctc |
19639830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 299
Target Start/End: Original strand, 38758191 - 38758376
Alignment:
| Q |
115 |
ttgccaactcaacaagtgacacgtatgcctctgttagccagcacaacatttttta-acggaagatgacgttagggaccaattccaaaaagttaacaagat |
213 |
Q |
| |
|
||||||| ||| || ||| ||||||||| ||||||||||| || |||||||| |||||| |||| |||||||||||| ||||| ||||| | || |
|
|
| T |
38758191 |
ttgccaattcatcatgtgccacgtatgcgtctgttagccaacaatgcatttttttgacggaaatagacggtagggaccaatttcaaaaggttaagtaaat |
38758290 |
T |
|
| Q |
214 |
acaagggctgttttgcaacnnnnnnngatacatggactaaaagcaaaaatagtccaacttactaggaccttttacatatttaagcc |
299 |
Q |
| |
|
||||||| ||||| ||||| |||||| ||||||||| |||||| | ||||||| ||||||||||| |||||||||| |
|
|
| T |
38758291 |
acaagggttgtttcgcaacaaaaaaagatacagggactaaaaccaaaaacgcgctaacttacagggaccttttacttatttaagcc |
38758376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 72
Target Start/End: Original strand, 41592991 - 41593055
Alignment:
| Q |
9 |
aattcgatgattacgttttttaatttcatcc-tatgtaaatatttgtttttggttttagtccctc |
72 |
Q |
| |
|
|||| |||| |||| |||||||||||||||| ||||| ||| || |||||||||||||||||||| |
|
|
| T |
41592991 |
aatttgatgtttactttttttaatttcatccctatgtcaattttcgtttttggttttagtccctc |
41593055 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 38758129 - 38758178
Alignment:
| Q |
24 |
ttttttaatttcatcc-tatgtaaatatttgtttttggttttagtccctc |
72 |
Q |
| |
|
|||||||||||| ||| |||||||| || ||||||||||||||||||||| |
|
|
| T |
38758129 |
ttttttaatttcgtccctatgtaaaaatgtgtttttggttttagtccctc |
38758178 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 74; Significance: 7e-34; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 53 - 222
Target Start/End: Original strand, 4284204 - 4284372
Alignment:
| Q |
53 |
gtttttggttttagtccctcgaataacatcacttatcatctctcatgccacataagcatgttttgccaactcaacaagtgacacgtatgcctctgttagc |
152 |
Q |
| |
|
|||||||||||| ||||||| ||| ||||||||||||| |||||| ||||||| | |||||||||||| |||||||||| | ||||||||||||| |
|
|
| T |
4284204 |
gtttttggttttggtccctcaaatctagtcacttatcatctttcatgc-acataagtgtactttgccaactcagcaagtgacacatgtgcctctgttagc |
4284302 |
T |
|
| Q |
153 |
cagcacaacattttttaacggaagatgacgttagggaccaattccaaaaagttaacaagatacaagggct |
222 |
Q |
| |
|
|| ||||| ||||||||||||| ||| |||||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
4284303 |
caacacaattttttttaacggaacctgatgttagggaccaattccaaaaagttaagaagatataagggct |
4284372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 81 - 222
Target Start/End: Original strand, 4241507 - 4241647
Alignment:
| Q |
81 |
tcacttatcatctctcatgccacataagcatgttttgccaactcaacaagtgacacgtatgcctctgttagccagcacaacattttttaacggaagatga |
180 |
Q |
| |
|
||||||||||||| |||||| ||||| | || |||||||||||| |||||||||| | ||||||||||||||| ||||| ||||||||| ||| ||| |
|
|
| T |
4241507 |
tcacttatcatctttcatgc-acataggtgtgctttgccaactcagcaagtgacacatgtgcctctgttagccaacacaattttttttaacagaacctga |
4241605 |
T |
|
| Q |
181 |
cgttagggaccaattccaaaaagttaacaagatacaagggct |
222 |
Q |
| |
|
| |||||||||||||||||||| |||| |||||| ||||||| |
|
|
| T |
4241606 |
cattagggaccaattccaaaaatttaagaagatataagggct |
4241647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 187 - 299
Target Start/End: Complemental strand, 34538238 - 34538126
Alignment:
| Q |
187 |
ggaccaattccaaaaagttaacaagatacaagggctgttttgcaacnnnnnnngatacatggactaaaagcaaaaatagtccaacttactaggacctttt |
286 |
Q |
| |
|
|||||| || ||||||||||| || ||||||||| ||||| ||||| |||||| ||||||||| |||||| | ||||||| ||||||||| |
|
|
| T |
34538238 |
ggaccagtttcaaaaagttaagaaaatacaagggttgtttcgcaacaaaaaaagatacaaggactaaaaccaaaaacgtgctaacttaccgggacctttt |
34538139 |
T |
|
| Q |
287 |
acatatttaagcc |
299 |
Q |
| |
|
||||||||||||| |
|
|
| T |
34538138 |
acatatttaagcc |
34538126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 11148597 - 11148548
Alignment:
| Q |
24 |
ttttttaatttcatcc-tatgtaaatatttgtttttggttttagtccctc |
72 |
Q |
| |
|
|||||||||||| ||| |||||||| || ||||||||||||||||||||| |
|
|
| T |
11148597 |
ttttttaatttcgtccctatgtaaaaatgtgtttttggttttagtccctc |
11148548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 77
Target Start/End: Complemental strand, 2671797 - 2671733
Alignment:
| Q |
14 |
gatgattacgttttttaatttcatcc-tatgtaaatatttgtttttggttttagtccctcgaata |
77 |
Q |
| |
|
|||||||| |||||||| |||| ||| ||||||||| | |||||||||||||||||||| |||| |
|
|
| T |
2671797 |
gatgattatgttttttattttcgtccctatgtaaatttgcgtttttggttttagtccctctaata |
2671733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1176 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold1176
Description:
Target: scaffold1176; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 53 - 190
Target Start/End: Complemental strand, 2298 - 2160
Alignment:
| Q |
53 |
gtttttggttttagtccctcgaataacatcacttatcatctctcatgccacataagcatgttttgccaactcaacaagtgacacgtatgcctctgttagc |
152 |
Q |
| |
|
|||||||||||| ||||||| ||| | |||||||||||| | ||| ||||||||||| |||||||||| ||| || || ||||| || ||| ||| || |
|
|
| T |
2298 |
gtttttggttttggtccctcaaatcatatcacttatcatttttcaggccacataagcgtgttttgccacgtcagtaattgccacgtgtgactccgtttgc |
2199 |
T |
|
| Q |
153 |
cagcacaacattttt-taacggaagatgacgttagggac |
190 |
Q |
| |
|
|||| |||| ||||| |||| |||| | ||||||||||| |
|
|
| T |
2198 |
cagctcaacgtttttgtaacagaagttaacgttagggac |
2160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 85 - 161
Target Start/End: Complemental strand, 12890449 - 12890373
Alignment:
| Q |
85 |
ttatcatctctcatgccacataagcatgttttgccaactcaacaagtgacacgtatgcctctgttagccagcacaac |
161 |
Q |
| |
|
||||||||| |||||| |||||||| |||||||||||||| ||||||||| || || ||| |||||||| |||||| |
|
|
| T |
12890449 |
ttatcatctttcatgcaacataagcgtgttttgccaactcggcaagtgacatgtgtgactccgttagccatcacaac |
12890373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 120
Target Start/End: Complemental strand, 28592323 - 28592257
Alignment:
| Q |
54 |
tttttggttttagtccctcgaataacatcacttatcatctctcatgccacataagcatgttttgcca |
120 |
Q |
| |
|
|||| |||||| ||||||| ||| | |||||||||||||| ||| ||||||||||| |||||||||| |
|
|
| T |
28592323 |
ttttgggttttggtccctcaaatcatatcacttatcatctgtcaggccacataagcgtgttttgcca |
28592257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1118 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold1118
Description:
Target: scaffold1118; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 53 - 120
Target Start/End: Complemental strand, 2659 - 2592
Alignment:
| Q |
53 |
gtttttggttttagtccctcgaataacatcacttatcatctctcatgccacataagcatgttttgcca |
120 |
Q |
| |
|
|||||||||||| ||||||| ||| | |||| ||||||| | ||| ||| |||||||||||||||||| |
|
|
| T |
2659 |
gtttttggttttcgtccctcaaatcatatcatttatcatatgtcaggccccataagcatgttttgcca |
2592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0517 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0517
Description:
Target: scaffold0517; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 9 - 94
Target Start/End: Original strand, 6783 - 6870
Alignment:
| Q |
9 |
aattcgatgattacgttttttaatttcatcc-tatgtaaatatttgtttt-tggttttagtccctcgaataacatcacttatcatctc |
94 |
Q |
| |
|
|||| |||| |||| |||||||| ||||||| ||||||||| | |||||| |||||||||||||| | |||||| |||||||||||| |
|
|
| T |
6783 |
aatttgatgtttaccttttttaacttcatccctatgtaaatttgtgttttttggttttagtccctgtactaacattacttatcatctc |
6870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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