View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11171A_low_58 (Length: 360)
Name: NF11171A_low_58
Description: NF11171A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11171A_low_58 |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 10 - 251
Target Start/End: Complemental strand, 56487755 - 56487502
Alignment:
| Q |
10 |
atgagatgaagggaatgaatgaaaagagttcacttactagagccatattagggtcgatctggactgaacctgcttattgctgcgaataataatcaaaatc |
109 |
Q |
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| T |
56487755 |
atgaaatgaagggaatgaatgaaaagagttcacttaccagagccatattagggtcgatctggactgaacctgcttattgctgcgaataataatcaaaatc |
56487656 |
T |
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| Q |
110 |
aga------------gataacgataatgaaaactgaaaagaaaccaaatctgccaagagatttcacttacagaggcagttagtttgagcggcggagtgat |
197 |
Q |
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| T |
56487655 |
aaaatcaaaatcaaagataacgataatgaaaactgaaaagaaaccaaatctgccaagagattttacttacagaggcagttagtttgagcggcggagtgat |
56487556 |
T |
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| Q |
198 |
ttagggtttcagttcctctcactgctatgcgatttactagtactagtatattcc |
251 |
Q |
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| T |
56487555 |
ttagggtttcagttcctctcactgctatgcgatttactagtactagtatattcc |
56487502 |
T |
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