View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11171A_low_6 (Length: 491)
Name: NF11171A_low_6
Description: NF11171A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11171A_low_6 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 424; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 5 - 491
Target Start/End: Complemental strand, 28153909 - 28153421
Alignment:
| Q |
5 |
atacaagatgatataaacagaactattactcaaaccttcaatgaggaaggtgactcaaatgatttaagcaaacttcatgtgaaggatatctatgccattc |
104 |
Q |
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| T |
28153909 |
atacaagatgatataaacagaactattactcaaaccttcaatgaggaaggtgactcaaatgatttaagcaaacttcatgtgaaggatatctatgccattc |
28153810 |
T |
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| Q |
105 |
tagaaatctcaaattatttggaagatgtccgggacctttgggaaagaagccacttttaatgatcaaagttttgaggttttttgtcttcttgaacgcatct |
204 |
Q |
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| T |
28153809 |
tagaaatctcaaattatttggaagatgtccgggatctttgggaaagaagccacttttaatgatcaaagttttgaggttttttgttttcttgaacgcatct |
28153710 |
T |
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| Q |
205 |
cctttccatgctacttttacgtctccaacttccaatgacagataatccatacatataatttcaattctacttgttcccttgaagcacacac--nnnnnnn |
302 |
Q |
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| T |
28153709 |
cctttccatgctacttttacgtctccaacatccaatgacaggtaatccatacatataatttcaattctgcttgttcccttgaagcacacacaaaaaaaaa |
28153610 |
T |
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| Q |
303 |
nnncacaaatcagaagaaatctatcactaagtaatcaaaagagataaatcaaggataaagaaacagttttctatgcatcggggaagtattgtgaaatcat |
402 |
Q |
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| T |
28153609 |
aaacacaaatcagaagaaatctatcactaagtaatcaaaagagataaatcaaggataaagaaacagttttctatgaatcggggaagtattgtgaaatcat |
28153510 |
T |
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| Q |
403 |
tcagtcaattcagatgacgtaggacgactattaggtaacttggatatggtgagtttcttaggacaataattagttcgtatgtactgtga |
491 |
Q |
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| T |
28153509 |
tcagtcaattcagatgacgtaggacgactattaggtaacttggatatggtgagtttcttaggacaataattagttcgtatgtactgtga |
28153421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 82 - 218
Target Start/End: Complemental strand, 28141597 - 28141461
Alignment:
| Q |
82 |
tgtgaaggatatctatgccattctagaaatctcaaattatttggaagatgtccgggacctttgggaaagaagccacttttaatgatcaaagttttgaggt |
181 |
Q |
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| T |
28141597 |
tgtgaaggataactacgccattccagtactcttaaattatttggaagatgctcaagacctttggaaaagcgacctcttttaataataaaagttttgaggt |
28141498 |
T |
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| Q |
182 |
tttttgtcttcttgaacgcatctcctttccatgctac |
218 |
Q |
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| T |
28141497 |
tttccatcttctttaattcatctcctttccattctac |
28141461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 83 - 213
Target Start/End: Complemental strand, 16693129 - 16692999
Alignment:
| Q |
83 |
gtgaaggatatctatgccattctagaaatctcaaattatttggaagatgtccgggacctttgggaaagaagccacttttaatgatcaaagttttgaggtt |
182 |
Q |
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| T |
16693129 |
gtgaaggatatctatgccattcaagcactcttaaactatttggaagatgttttggtcctttggaaaagtgaccattcttaataataagtgttttgaggtt |
16693030 |
T |
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| Q |
183 |
ttttgtcttcttgaacgcatctcctttccat |
213 |
Q |
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| T |
16693029 |
tatcatcttcttgaactcatcacctttccat |
16692999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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