View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11171A_low_60 (Length: 357)

Name: NF11171A_low_60
Description: NF11171A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11171A_low_60
NF11171A_low_60
[»] chr1 (6 HSPs)
chr1 (42-137)||(42735895-42735991)
chr1 (92-137)||(12613242-12613287)
chr1 (59-129)||(3229682-3229753)
chr1 (99-129)||(27094297-27094327)
chr1 (101-129)||(13763835-13763863)
chr1 (92-132)||(18512540-18512580)
[»] chr8 (12 HSPs)
chr8 (53-126)||(4113116-4113189)
chr8 (52-127)||(44615705-44615780)
chr8 (92-132)||(37708756-37708796)
chr8 (46-132)||(13105109-13105196)
chr8 (59-133)||(14181306-14181381)
chr8 (63-130)||(35485747-35485814)
chr8 (92-133)||(26217856-26217897)
chr8 (91-132)||(34873150-34873191)
chr8 (91-132)||(36035144-36035185)
chr8 (92-132)||(31024359-31024399)
chr8 (92-132)||(33810705-33810745)
chr8 (92-132)||(44053405-44053445)
[»] chr7 (6 HSPs)
chr7 (59-133)||(37710116-37710191)
chr7 (77-126)||(3408936-3408985)
chr7 (94-130)||(20421726-20421762)
chr7 (95-130)||(43404941-43404976)
chr7 (73-130)||(21402795-21402852)
chr7 (55-127)||(28735196-28735269)
[»] chr5 (6 HSPs)
chr5 (46-129)||(27545119-27545203)
chr5 (101-137)||(14970353-14970389)
chr5 (94-133)||(34434264-34434303)
chr5 (91-133)||(4418306-4418348)
chr5 (92-132)||(3741019-3741059)
chr5 (94-130)||(6167279-6167315)
[»] chr4 (6 HSPs)
chr4 (93-137)||(47586284-47586328)
chr4 (92-132)||(30305864-30305904)
chr4 (53-129)||(17435448-17435525)
chr4 (94-130)||(2860699-2860735)
chr4 (92-132)||(36099148-36099188)
chr4 (59-130)||(37868534-37868606)
[»] chr6 (6 HSPs)
chr6 (95-129)||(29646719-29646753)
chr6 (55-129)||(2044608-2044684)
chr6 (52-123)||(30064288-30064359)
chr6 (57-132)||(1368152-1368228)
chr6 (92-132)||(18904330-18904370)
chr6 (92-132)||(32616449-32616489)
[»] chr3 (13 HSPs)
chr3 (91-132)||(36478153-36478194)
chr3 (57-132)||(25883953-25884029)
chr3 (92-132)||(41710648-41710688)
chr3 (92-132)||(46767408-46767448)
chr3 (57-132)||(44880593-44880668)
chr3 (94-132)||(8488494-8488532)
chr3 (101-130)||(4808012-4808041)
chr3 (65-137)||(9114048-9114121)
chr3 (92-133)||(14795176-14795217)
chr3 (53-93)||(10840440-10840480)
chr3 (92-132)||(15085649-15085689)
chr3 (92-132)||(27329897-27329937)
chr3 (92-132)||(51879160-51879200)
[»] chr2 (6 HSPs)
chr2 (82-131)||(17605482-17605531)
chr2 (57-119)||(4398251-4398314)
chr2 (55-118)||(13772977-13773039)
chr2 (101-131)||(10463160-10463190)
chr2 (73-126)||(13424056-13424109)
chr2 (92-132)||(20497160-20497200)
[»] scaffold0045 (1 HSPs)
scaffold0045 (52-123)||(32156-32228)


Alignment Details
Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 42 - 137
Target Start/End: Original strand, 42735895 - 42735991
Alignment:
Q  42 tcatttggcaggaacaatgcataatatatgcagggttg-gagttcaaatttcggacatctcacttctctacatttaaaatgtgtgagctccaatcac 137  Q
    |||||||| ||| | |||||||||||||||||||| |  | |||  |||| |||||| | |||||||||||||||||||||||||||||||||||||    
T  42735895 tcatttggtagggaaaatgcataatatatgcaggggtctgggtttgaattccggacaccccacttctctacatttaaaatgtgtgagctccaatcac 42735991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 92 - 137
Target Start/End: Original strand, 12613242 - 12613287
Alignment:
Q  92 cggacatctcacttctctacatttaaaatgtgtgagctccaatcac 137  Q
    |||||| | |||||||||||||||||||||||||||||||||||||    
T  12613242 cggacaccccacttctctacatttaaaatgtgtgagctccaatcac 12613287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 59 - 129
Target Start/End: Complemental strand, 3229753 - 3229682
Alignment:
Q  59 tgcataatatatgcaggg-ttggagttcaaatttcggacatctcacttctctacatttaaaatgtgtgagct 129  Q
    ||||||||||||| |||| |||| |||||||   |||||||| ||||||| |||||||||||||||||||||    
T  3229753 tgcataatatatgtaggggttggggttcaaaccccggacatcccacttctttacatttaaaatgtgtgagct 3229682  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 129
Target Start/End: Complemental strand, 27094327 - 27094297
Alignment:
Q  99 ctcacttctctacatttaaaatgtgtgagct 129  Q
    |||||||||||||||||||||||||||||||    
T  27094327 ctcacttctctacatttaaaatgtgtgagct 27094297  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 129
Target Start/End: Original strand, 13763835 - 13763863
Alignment:
Q  101 cacttctctacatttaaaatgtgtgagct 129  Q
    |||||||||||||||||||||||||||||    
T  13763835 cacttctctacatttaaaatgtgtgagct 13763863  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 92 - 132
Target Start/End: Complemental strand, 18512580 - 18512540
Alignment:
Q  92 cggacatctcacttctctacatttaaaatgtgtgagctcca 132  Q
    |||||| | |||||||| |||||||||||||||||||||||    
T  18512580 cggacaccccacttctccacatttaaaatgtgtgagctcca 18512540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 53 - 126
Target Start/End: Complemental strand, 4113189 - 4113116
Alignment:
Q  53 gaacaatgcataatatatgcagggttggagttcaaatttcggacatctcacttctctacatttaaaatgtgtga 126  Q
    |||||||| |||||||||| |||||| |||||||||  ||||||||||||||  || |||||||||||||||||    
T  4113189 gaacaatgtataatatatgtagggttagagttcaaacatcggacatctcactcttccacatttaaaatgtgtga 4113116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 52 - 127
Target Start/End: Original strand, 44615705 - 44615780
Alignment:
Q  52 ggaacaatgcataatatatgcagggttggagttcaaatttcggacatctcacttctctacatttaaaatgtgtgag 127  Q
    |||||| |||||||||||||||||||| |||||| ||   |||||| |||| ||||  ||||||||||||||||||    
T  44615705 ggaacattgcataatatatgcagggttagagttcgaaccccggacacctcatttcttcacatttaaaatgtgtgag 44615780  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 132
Target Start/End: Original strand, 37708756 - 37708796
Alignment:
Q  92 cggacatctcacttctctacatttaaaatgtgtgagctcca 132  Q
    |||||||| |||||||| |||||||||||||||||||||||    
T  37708756 cggacatcccacttctccacatttaaaatgtgtgagctcca 37708796  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 46 - 132
Target Start/End: Original strand, 13105109 - 13105196
Alignment:
Q  46 ttggcaggaacaatgcataatatatgca-gggttggagttcaaatttcggacatctcacttctctacatttaaaatgtgtgagctcca 132  Q
    |||| ||| ||||||||||||||||||| |||  || |||| ||  || |||| | |||||||| |||||||||||||||||||||||    
T  13105109 ttggtagggacaatgcataatatatgcaagggccggggttcgaacctcagacaccccacttctccacatttaaaatgtgtgagctcca 13105196  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 59 - 133
Target Start/End: Complemental strand, 14181381 - 14181306
Alignment:
Q  59 tgcataatatatgcag-ggttggagttcaaatttcggacatctcacttctctacatttaaaatgtgtgagctccaa 133  Q
    |||||||||||||||| ||||||  ||| ||  || |||||||||||||||  |||||||||||| ||||||||||    
T  14181381 tgcataatatatgcagaggttgggattcgaacctccgacatctcacttctccgcatttaaaatgtatgagctccaa 14181306  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 63 - 130
Target Start/End: Complemental strand, 35485814 - 35485747
Alignment:
Q  63 taatatatgcagggttggagttcaaatttcggacatctcacttctctacatttaaaatgtgtgagctc 130  Q
    ||||||||||| ||||||||||| |||  | ||||  |||||||| ||| ||||||||||||||||||    
T  35485814 taatatatgcatggttggagttcgaatcccagacacttcacttctatacgtttaaaatgtgtgagctc 35485747  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 133
Target Start/End: Original strand, 26217856 - 26217897
Alignment:
Q  92 cggacatctcacttctctacatttaaaatgtgtgagctccaa 133  Q
    |||||| |||||||||| ||||||||||||||||| ||||||    
T  26217856 cggacacctcacttctccacatttaaaatgtgtgatctccaa 26217897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 132
Target Start/End: Original strand, 34873150 - 34873191
Alignment:
Q  91 tcggacatctcacttctctacatttaaaatgtgtgagctcca 132  Q
    ||||||| | |||||||| |||||||||||||||||||||||    
T  34873150 tcggacaccccacttctccacatttaaaatgtgtgagctcca 34873191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 132
Target Start/End: Complemental strand, 36035185 - 36035144
Alignment:
Q  91 tcggacatctcacttctctacatttaaaatgtgtgagctcca 132  Q
    ||||||| | |||||||| |||||||||||||||||||||||    
T  36035185 tcggacaccccacttctccacatttaaaatgtgtgagctcca 36035144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 92 - 132
Target Start/End: Original strand, 31024359 - 31024399
Alignment:
Q  92 cggacatctcacttctctacatttaaaatgtgtgagctcca 132  Q
    |||||| | |||||||| |||||||||||||||||||||||    
T  31024359 cggacaccccacttctccacatttaaaatgtgtgagctcca 31024399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 92 - 132
Target Start/End: Original strand, 33810705 - 33810745
Alignment:
Q  92 cggacatctcacttctctacatttaaaatgtgtgagctcca 132  Q
    |||||| | |||||||| |||||||||||||||||||||||    
T  33810705 cggacaccccacttctccacatttaaaatgtgtgagctcca 33810745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 92 - 132
Target Start/End: Complemental strand, 44053445 - 44053405
Alignment:
Q  92 cggacatctcacttctctacatttaaaatgtgtgagctcca 132  Q
    |||||| | |||||||| |||||||||||||||||||||||    
T  44053445 cggacaccccacttctccacatttaaaatgtgtgagctcca 44053405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 59 - 133
Target Start/End: Original strand, 37710116 - 37710191
Alignment:
Q  59 tgcataatatatgcagggt-tggagttcaaatttcggacatctcacttctctacatttaaaatgtgtgagctccaa 133  Q
    ||||||||||||| ||||  |||||||| |||  || |||||||||||||| ||||||||||||||||||||||||    
T  37710116 tgcataatatatgtagggactggagttcgaatcacgaacatctcacttctccacatttaaaatgtgtgagctccaa 37710191  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 77 - 126
Target Start/End: Original strand, 3408936 - 3408985
Alignment:
Q  77 ttggagttcaaatttcggacatctcacttctctacatttaaaatgtgtga 126  Q
    ||||||||  |||||||||||||||||||||||| |||||||||||||||    
T  3408936 ttggagtttgaatttcggacatctcacttctctatatttaaaatgtgtga 3408985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 130
Target Start/End: Complemental strand, 20421762 - 20421726
Alignment:
Q  94 gacatctcacttctctacatttaaaatgtgtgagctc 130  Q
    ||||||||||||||| |||||||||||||||||||||    
T  20421762 gacatctcacttctccacatttaaaatgtgtgagctc 20421726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 95 - 130
Target Start/End: Complemental strand, 43404976 - 43404941
Alignment:
Q  95 acatctcacttctctacatttaaaatgtgtgagctc 130  Q
    |||||||||||||| |||||||||||||||||||||    
T  43404976 acatctcacttctccacatttaaaatgtgtgagctc 43404941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 130
Target Start/End: Complemental strand, 21402852 - 21402795
Alignment:
Q  73 agggttggagttcaaatttcggacatctcacttctctacatttaaaatgtgtgagctc 130  Q
    |||||||| |||  || |||||| | |||||||||| |||||||||||||||||||||    
T  21402852 agggttggggtttgaacttcggagacctcacttctccacatttaaaatgtgtgagctc 21402795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 127
Target Start/End: Complemental strand, 28735269 - 28735196
Alignment:
Q  55 acaatgcataatatatgcag-ggttggagttcaaatttcggacatctcacttctctacatttaaaatgtgtgag 127  Q
    |||||||||||||||||||| ||| | ||||| ||||   |||||| |||||||| | ||||||||||||||||    
T  28735269 acaatgcataatatatgcagaggtcgaagttcgaattctagacatcccacttctccatatttaaaatgtgtgag 28735196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 46 - 129
Target Start/End: Complemental strand, 27545203 - 27545119
Alignment:
Q  46 ttggcaggaacaatgcataatatatgcagggttggag-ttcaaatttcggacatctcacttctctacatttaaaatgtgtgagct 129  Q
    |||| ||| ||||||||||||||||||| || | ||| ||||||| ||||||| |||||||||  | ||||||||||||||||||    
T  27545203 ttggtagggacaatgcataatatatgcaagggtcgaggttcaaatctcggacacctcacttcttcatatttaaaatgtgtgagct 27545119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 137
Target Start/End: Original strand, 14970353 - 14970389
Alignment:
Q  101 cacttctctacatttaaaatgtgtgagctccaatcac 137  Q
    |||||||||||||||||||||||| ||||||||||||    
T  14970353 cacttctctacatttaaaatgtgtaagctccaatcac 14970389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 94 - 133
Target Start/End: Complemental strand, 34434303 - 34434264
Alignment:
Q  94 gacatctcacttctctacatttaaaatgtgtgagctccaa 133  Q
    |||| |||| ||||||||||||||||||||||||||||||    
T  34434303 gacacctcatttctctacatttaaaatgtgtgagctccaa 34434264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 133
Target Start/End: Complemental strand, 4418348 - 4418306
Alignment:
Q  91 tcggacatctcacttctctacatttaaaatgtgtgagctccaa 133  Q
    ||||||| |||| ||||| ||||||||||||||||||||||||    
T  4418348 tcggacacctcatttctccacatttaaaatgtgtgagctccaa 4418306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 92 - 132
Target Start/End: Original strand, 3741019 - 3741059
Alignment:
Q  92 cggacatctcacttctctacatttaaaatgtgtgagctcca 132  Q
    |||||| | |||||||| |||||||||||||||||||||||    
T  3741019 cggacaccccacttctccacatttaaaatgtgtgagctcca 3741059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 130
Target Start/End: Original strand, 6167279 - 6167315
Alignment:
Q  94 gacatctcacttctctacatttaaaatgtgtgagctc 130  Q
    |||| |||||||||| |||||||||||||||||||||    
T  6167279 gacacctcacttctccacatttaaaatgtgtgagctc 6167315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 93 - 137
Target Start/End: Original strand, 47586284 - 47586328
Alignment:
Q  93 ggacatctcacttctctacatttaaaatgtgtgagctccaatcac 137  Q
    |||||||||||||||| ||||||||||||||||||||| ||||||    
T  47586284 ggacatctcacttctccacatttaaaatgtgtgagctcaaatcac 47586328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 132
Target Start/End: Original strand, 30305864 - 30305904
Alignment:
Q  92 cggacatctcacttctctacatttaaaatgtgtgagctcca 132  Q
    |||||| |||||||||| |||||||||||||||||||||||    
T  30305864 cggacacctcacttctccacatttaaaatgtgtgagctcca 30305904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 129
Target Start/End: Complemental strand, 17435525 - 17435448
Alignment:
Q  53 gaacaatgcataatatatgcagggt-tggagttcaaatttcggacatctcacttctctacatttaaaatgtgtgagct 129  Q
    |||||||||||||||||| |||||  || ||||||||   || ||| | ||||||||||||| |||||||||||||||    
T  17435525 gaacaatgcataatatatacaggggctgaagttcaaaccccgcacaccccacttctctacatgtaaaatgtgtgagct 17435448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 130
Target Start/End: Complemental strand, 2860735 - 2860699
Alignment:
Q  94 gacatctcacttctctacatttaaaatgtgtgagctc 130  Q
    ||||||||||||||| | |||||||||||||||||||    
T  2860735 gacatctcacttctccatatttaaaatgtgtgagctc 2860699  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 92 - 132
Target Start/End: Complemental strand, 36099188 - 36099148
Alignment:
Q  92 cggacatctcacttctctacatttaaaatgtgtgagctcca 132  Q
    |||||| | |||||||| |||||||||||||||||||||||    
T  36099188 cggacaccccacttctccacatttaaaatgtgtgagctcca 36099148  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 59 - 130
Target Start/End: Complemental strand, 37868606 - 37868534
Alignment:
Q  59 tgcataatatatgcagggt-tggagttcaaatttcggacatctcacttctctacatttaaaatgtgtgagctc 130  Q
    |||||| |||||||||||  |||||||| ||  ||||||| |||||||||| ||| ||||| |||||||||||    
T  37868606 tgcatattatatgcaggggctggagttcgaacctcggacacctcacttctccacaattaaattgtgtgagctc 37868534  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 95 - 129
Target Start/End: Complemental strand, 29646753 - 29646719
Alignment:
Q  95 acatctcacttctctacatttaaaatgtgtgagct 129  Q
    |||||||||||||||||||||||||||||||||||    
T  29646753 acatctcacttctctacatttaaaatgtgtgagct 29646719  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 129
Target Start/End: Complemental strand, 2044684 - 2044608
Alignment:
Q  55 acaatgcataata-tatgcag-ggttggagttcaaatttcggacatctcacttctctacatttaaaatgtgtgagct 129  Q
    ||||||||||||| ||||||| ||| ||||||| ||  | |||||||| | ||||||||||||||||||||||||||    
T  2044684 acaatgcataataatatgcagaggtcggagttcgaacgttggacatctaatttctctacatttaaaatgtgtgagct 2044608  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 52 - 123
Target Start/End: Original strand, 30064288 - 30064359
Alignment:
Q  52 ggaacaatgcataatatatgcagggttggagttcaaatttcggacatctcacttctctacatttaaaatgtg 123  Q
    |||||| |||||||||||||||||| |  ||||| ||| ||||||| |||| ||||  ||||||||||||||    
T  30064288 ggaacattgcataatatatgcagggctaaagttcgaatctcggacacctcatttcttcacatttaaaatgtg 30064359  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 132
Target Start/End: Complemental strand, 1368228 - 1368152
Alignment:
Q  57 aatgcataatatatgcagggt-tggagttcaaatttcggacatctcacttctctacatttaaaatgtgtgagctcca 132  Q
    |||||| |||||||||||||  | | ||||||| | | |||| | |||||||| |||||||||||||||||||||||    
T  1368228 aatgcacaatatatgcaggggctagggttcaaactccagacaccccacttctccacatttaaaatgtgtgagctcca 1368152  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 92 - 132
Target Start/End: Original strand, 18904330 - 18904370
Alignment:
Q  92 cggacatctcacttctctacatttaaaatgtgtgagctcca 132  Q
    |||||| | |||||||| |||||||||||||||||||||||    
T  18904330 cggacaccccacttctccacatttaaaatgtgtgagctcca 18904370  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 92 - 132
Target Start/End: Original strand, 32616449 - 32616489
Alignment:
Q  92 cggacatctcacttctctacatttaaaatgtgtgagctcca 132  Q
    |||||| | ||||||||| ||||||||||||||||||||||    
T  32616449 cggacaccccacttctctgcatttaaaatgtgtgagctcca 32616489  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 91 - 132
Target Start/End: Complemental strand, 36478194 - 36478153
Alignment:
Q  91 tcggacatctcacttctctacatttaaaatgtgtgagctcca 132  Q
    |||||||||||||||||| ||||| |||||||||||||||||    
T  36478194 tcggacatctcacttctccacattaaaaatgtgtgagctcca 36478153  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 132
Target Start/End: Complemental strand, 25884029 - 25883953
Alignment:
Q  57 aatgcataatatatgcagggtt-ggagttcaaatttcggacatctcacttctctacatttaaaatgtgtgagctcca 132  Q
    |||||||||||||||||||| | || |||| ||   |||||| | |||||||| |||||||||||||||||||||||    
T  25884029 aatgcataatatatgcaggggtcggggttcgaaccccggacaccccacttctccacatttaaaatgtgtgagctcca 25883953  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 132
Target Start/End: Original strand, 41710648 - 41710688
Alignment:
Q  92 cggacatctcacttctctacatttaaaatgtgtgagctcca 132  Q
    |||||| |||||||||| |||||||||||||||||||||||    
T  41710648 cggacacctcacttctccacatttaaaatgtgtgagctcca 41710688  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 132
Target Start/End: Original strand, 46767408 - 46767448
Alignment:
Q  92 cggacatctcacttctctacatttaaaatgtgtgagctcca 132  Q
    |||||||| |||||||| |||||||||||||||||||||||    
T  46767408 cggacatcccacttctccacatttaaaatgtgtgagctcca 46767448  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 57 - 132
Target Start/End: Original strand, 44880593 - 44880668
Alignment:
Q  57 aatgcataatatatgcagggttggagttcaaatttcggacatctcacttctctacatttaaaatgtgtgagctcca 132  Q
    ||||||| ||||||||||||   | |||| ||| ||||||||| |||||||| |||||||| || |||||||||||    
T  44880593 aatgcatgatatatgcaggggatgggttcgaatctcggacatcccacttctccacatttaatatatgtgagctcca 44880668  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 132
Target Start/End: Original strand, 8488494 - 8488532
Alignment:
Q  94 gacatctcacttctctacatttaaaatgtgtgagctcca 132  Q
    |||| |||||||||| |||||||||||||||||||||||    
T  8488494 gacacctcacttctccacatttaaaatgtgtgagctcca 8488532  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 130
Target Start/End: Complemental strand, 4808041 - 4808012
Alignment:
Q  101 cacttctctacatttaaaatgtgtgagctc 130  Q
    ||||||||||||||||||||||||||||||    
T  4808041 cacttctctacatttaaaatgtgtgagctc 4808012  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 137
Target Start/End: Original strand, 9114048 - 9114121
Alignment:
Q  65 atatatgcagggttggag-ttcaaatttcggacatctcacttctctacatttaaaatgtgtgagctccaatcac 137  Q
    |||||||||||| | ||| ||| |||| | |||| | |||||||| ||||||||||||||||||||||| ||||    
T  9114048 atatatgcaggggtcgagattcgaattccagacaccccacttctccacatttaaaatgtgtgagctccagtcac 9114121  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 133
Target Start/End: Original strand, 14795176 - 14795217
Alignment:
Q  92 cggacatctcacttctctacatttaaaatgtgtgagctccaa 133  Q
    |||||| | |||||||| ||||||||||||||||||||||||    
T  14795176 cggacaccccacttctccacatttaaaatgtgtgagctccaa 14795217  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 53 - 93
Target Start/End: Original strand, 10840440 - 10840480
Alignment:
Q  53 gaacaatgcataatatatgcagggttggagttcaaatttcg 93  Q
    ||||||||||||||||||| ||| |||||||||||| ||||    
T  10840440 gaacaatgcataatatatgaaggtttggagttcaaacttcg 10840480  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 92 - 132
Target Start/End: Complemental strand, 15085689 - 15085649
Alignment:
Q  92 cggacatctcacttctctacatttaaaatgtgtgagctcca 132  Q
    |||||| |||||||||| | |||||||||||||||||||||    
T  15085689 cggacacctcacttctccatatttaaaatgtgtgagctcca 15085649  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 92 - 132
Target Start/End: Complemental strand, 27329937 - 27329897
Alignment:
Q  92 cggacatctcacttctctacatttaaaatgtgtgagctcca 132  Q
    |||||| | |||||||| |||||||||||||||||||||||    
T  27329937 cggacaccccacttctccacatttaaaatgtgtgagctcca 27329897  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 92 - 132
Target Start/End: Original strand, 51879160 - 51879200
Alignment:
Q  92 cggacatctcacttctctacatttaaaatgtgtgagctcca 132  Q
    |||||| | |||||||| |||||||||||||||||||||||    
T  51879160 cggacaccccacttctccacatttaaaatgtgtgagctcca 51879200  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 82 - 131
Target Start/End: Original strand, 17605482 - 17605531
Alignment:
Q  82 gttcaaatttcggacatctcacttctctacatttaaaatgtgtgagctcc 131  Q
    |||||||  |||||||||||||||||| ||||||||||||||||| ||||    
T  17605482 gttcaaacctcggacatctcacttctcaacatttaaaatgtgtgaactcc 17605531  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 57 - 119
Target Start/End: Original strand, 4398251 - 4398314
Alignment:
Q  57 aatgcataatatatgcaggg-ttggagttcaaatttcggacatctcacttctctacatttaaaa 119  Q
    ||||||||||||||| |||| ||||||||| ||| | ||||| ||||||||| |||||||||||    
T  4398251 aatgcataatatatggaggggttggagttcgaatcttggacacctcacttctttacatttaaaa 4398314  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 55 - 118
Target Start/End: Original strand, 13772977 - 13773039
Alignment:
Q  55 acaatgcataatatatgcagggttggagttcaaatttcggacatctcacttctctacatttaaa 118  Q
    ||||||||||||||||| || |||| |||||||| ||| ||||| ||||||||| |||||||||    
T  13772977 acaatgcataatatatgtagagttgaagttcaaacttcagacat-tcacttctccacatttaaa 13773039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 131
Target Start/End: Complemental strand, 10463190 - 10463160
Alignment:
Q  101 cacttctctacatttaaaatgtgtgagctcc 131  Q
    |||||||||||||||||||||||||||||||    
T  10463190 cacttctctacatttaaaatgtgtgagctcc 10463160  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 126
Target Start/End: Complemental strand, 13424109 - 13424056
Alignment:
Q  73 agggttggagttcaaatttcggacatctcacttctctacatttaaaatgtgtga 126  Q
    ||||||||||||| ||  ||  |||||||||||||| |||||||||||||||||    
T  13424109 agggttggagttcgaacatcaaacatctcacttctccacatttaaaatgtgtga 13424056  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 92 - 132
Target Start/End: Complemental strand, 20497200 - 20497160
Alignment:
Q  92 cggacatctcacttctctacatttaaaatgtgtgagctcca 132  Q
    |||||| | |||||||| |||||||||||||||||||||||    
T  20497200 cggacaccccacttctccacatttaaaatgtgtgagctcca 20497160  T

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Target: scaffold0045 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 123
Target Start/End: Original strand, 32156 - 32228
Alignment:
Q  52 ggaacaatgcataatatatgcaggg-ttggagttcaaatttcggacatctcacttctctacatttaaaatgtg 123  Q
    |||||| ||||||||||||||||||  ||| ||||||||| | |||| | ||||||||| |||||| ||||||    
T  32156 ggaacattgcataatatatgcagggactggggttcaaattccagacaccccacttctctgcatttagaatgtg 32228  T

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