View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11171A_low_66 (Length: 338)
Name: NF11171A_low_66
Description: NF11171A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11171A_low_66 |
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Alignment Details
Target: chr8 (Bit Score: 181; Significance: 9e-98; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 104 - 316
Target Start/End: Complemental strand, 37968351 - 37968139
Alignment:
| Q |
104 |
tgctaacatgtgcccttttaacacatgttaaagtatcaaagatgcaaaagattaaaatttaattttacacaataaatatttgaattttatgaaaacctta |
203 |
Q |
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| T |
37968351 |
tgctaacatgtacccttttaacacatgttaaagtatcaaagatgcaaaagattgaaatttaattttacacaataaatatttgatttttatgaaaacctta |
37968252 |
T |
|
| Q |
204 |
acatatgctctaagtgtacatgttagcatgacccataaaaaatggtctaatctatttaaggtccgacatagtatttttagtaaaagattcaaagtcaggc |
303 |
Q |
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| T |
37968251 |
acatatgctctaagtgtacatgttaacatgacctgtaaaaaatggtctagtctatttaaggtcagacatagtatttttagtaaaagattcaaagtcaggc |
37968152 |
T |
|
| Q |
304 |
tttttaaaaaaca |
316 |
Q |
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||||||||||||| |
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| T |
37968151 |
tttttaaaaaaca |
37968139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 33 - 80
Target Start/End: Complemental strand, 37968422 - 37968375
Alignment:
| Q |
33 |
gagatggacatcaacgggaactttatggtctagtcaatttaattcctc |
80 |
Q |
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| T |
37968422 |
gagatggccatcaacgggaactttatggtctagtcaatttaattcctc |
37968375 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 151 - 237
Target Start/End: Original strand, 10589466 - 10589552
Alignment:
| Q |
151 |
aagattaaaatttaattttacacaataaatatttgaattttatgaaaaccttaacatatgctctaagtgtacatgttagcatgaccc |
237 |
Q |
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| T |
10589466 |
aagattaaaatttaatgtttctcaataaatatttgctctttatgaaaaccttaacatgtgctctacgggcacatgttagcatgaccc |
10589552 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 148 - 207
Target Start/End: Original strand, 3676057 - 3676117
Alignment:
| Q |
148 |
caaaagattaaaatttaattttacacaataaatatttga-attttatgaaaaccttaacat |
207 |
Q |
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| T |
3676057 |
caaaagattgaaatttaattttgcacaataaatatttaattttttatgaaaaccttaacat |
3676117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 149 - 237
Target Start/End: Complemental strand, 26241383 - 26241295
Alignment:
| Q |
149 |
aaaagattaaaatttaattttacacaataaatatttgaattttatgaaaaccttaacatatgctctaagtgtacatgttagcatgaccc |
237 |
Q |
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|||||||| |||||||||||| ||| ||||||||||| |||| || |||||||||||| || |||| | ||||||||||||||||| |
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| T |
26241383 |
aaaagattgaaatttaattttgcacgataaatatttgctttttgtggaaaccttaacatgtgtcataagggcacatgttagcatgaccc |
26241295 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 148 - 209
Target Start/End: Original strand, 4923628 - 4923689
Alignment:
| Q |
148 |
caaaagattaaaatttaattttacacaataaatatttgaattttatgaaaaccttaacatat |
209 |
Q |
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| T |
4923628 |
caaaagattgaaatttaattttacacaataaatatttattttgtatggaaactttaacatat |
4923689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 158 - 210
Target Start/End: Complemental strand, 28038589 - 28038537
Alignment:
| Q |
158 |
aaatttaattttacacaataaatatttgaattttatgaaaaccttaacatatg |
210 |
Q |
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|||||||||||| | ||||||||||||| |||||| ||||||||||||||| |
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| T |
28038589 |
aaatttaatttttctcaataaatatttgctatttatggaaaccttaacatatg |
28038537 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 149 - 185
Target Start/End: Original strand, 35237873 - 35237909
Alignment:
| Q |
149 |
aaaagattaaaatttaattttacacaataaatatttg |
185 |
Q |
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|||||||| |||||||||||| ||||||||||||||| |
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|
| T |
35237873 |
aaaagattgaaatttaattttgcacaataaatatttg |
35237909 |
T |
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