View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11171A_low_68 (Length: 336)
Name: NF11171A_low_68
Description: NF11171A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11171A_low_68 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 85 - 336
Target Start/End: Complemental strand, 44535336 - 44535085
Alignment:
| Q |
85 |
gtgctagagaccccttgcaagcattttctcataattctcaatggattgaagcctttgaatcacgagttgtttcctgaaattcttgatgaaggcatcagca |
184 |
Q |
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| T |
44535336 |
gtgctagagaccccttgcaagcattttctcataattctcaatggattgaagcctttgaatcacgagttgtttcctgaaattcttgatgaaggcatcagca |
44535237 |
T |
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| Q |
185 |
ctggcattgatgtcttctgtagtcttcctctctagcttcttatttgtttcaaaggagtcctcaactttctttacctcattatgatcatatgataatgaag |
284 |
Q |
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| T |
44535236 |
ctggcattgatgtcttctgtagtcttcctctctagcttcttatttgtttcaaaggagtcctcaactttctttacctcattatgatcatatgataatgaag |
44535137 |
T |
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| Q |
285 |
ttgatgagtttctcatcttctccctcatgttggtagtaaccttttcctctat |
336 |
Q |
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| T |
44535136 |
ttgatgagtttctcatcttctccctcatgttggtagtaaccttttcctctat |
44535085 |
T |
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Back To:
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Target: chr4 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 95 - 202
Target Start/End: Original strand, 2579856 - 2579963
Alignment:
| Q |
95 |
ccccttgcaagcattttctcataattctcaatggattgaagcctttgaatcacgagttgtttcctgaaattcttgatgaaggcatcagcactggcattga |
194 |
Q |
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||||| |||||||||||||||||||||||||| ||||||||||| |||| || || || | ||| || ||||| ||||||||||||||||| ||||||| |
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| T |
2579856 |
cccctagcaagcattttctcataattctcaatagattgaagcctctgaagcataagctgctgcctaaagttcttaatgaaggcatcagcactagcattga |
2579955 |
T |
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| Q |
195 |
tgtcttct |
202 |
Q |
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| T |
2579956 |
tatcttct |
2579963 |
T |
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