View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11171A_low_7 (Length: 490)

Name: NF11171A_low_7
Description: NF11171A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11171A_low_7
NF11171A_low_7
[»] chr7 (15 HSPs)
chr7 (25-480)||(24122006-24122461)
chr7 (43-281)||(24132455-24132693)
chr7 (51-281)||(24232527-24232757)
chr7 (25-272)||(24151095-24151342)
chr7 (44-269)||(24138389-24138614)
chr7 (45-249)||(24238059-24238263)
chr7 (41-249)||(24154266-24154474)
chr7 (42-250)||(24284008-24284217)
chr7 (39-279)||(3494819-3495059)
chr7 (30-241)||(24161168-24161379)
chr7 (146-263)||(21194261-21194378)
chr7 (39-224)||(24146118-24146303)
chr7 (92-213)||(21199524-21199645)
chr7 (132-240)||(23342851-23342959)
chr7 (135-209)||(23348065-23348139)
[»] chr2 (2 HSPs)
chr2 (30-213)||(28160509-28160692)
chr2 (56-279)||(10988778-10989001)
[»] chr1 (2 HSPs)
chr1 (58-275)||(15380143-15380360)
chr1 (39-279)||(3151024-3151263)
[»] chr6 (1 HSPs)
chr6 (406-462)||(1861430-1861486)
[»] chr3 (1 HSPs)
chr3 (132-172)||(1157403-1157443)
[»] chr8 (2 HSPs)
chr8 (414-457)||(29484932-29484975)
chr8 (409-457)||(24284213-24284261)
[»] chr5 (1 HSPs)
chr5 (403-457)||(2233170-2233224)


Alignment Details
Target: chr7 (Bit Score: 448; Significance: 0; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 25 - 480
Target Start/End: Original strand, 24122006 - 24122461
Alignment:
Q  25 ctttacaggtattggaccatagatagtgttcatcaagatctgatacactttgataaagtgtactcaggctgccaaatctcactgcttcaatatctgactc 124  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24122006 ctttgcaggtattggaccatagatagtgttcatcaagatctgatacactttgataaagtgtactcaggctgccaaatctcactgcttcaatatctgactc 24122105  T
Q  125 cttagccacaagtcttgaaatagtacctaatggtaaggttaagaagctgaaaagagcatcaacaaaatccttccctgcttcagcatacacaactttgttt 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24122106 cttagccacaagtcttgaaatagtacctaatggtaaggttaagaagctgaaaagagcatcaacaaaatccttccctgcttcagcatacacaactttgttt 24122205  T
Q  225 atttctttgtccaccatgactctcaaggtaacttcgtcaccttgttcaactgattcacttaaatttccagcagccataggatagaaatcacagattaacc 324  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24122206 atttctttgtccaccatgactctcaaggtaacttcgtcaccttgttcaactgattcacttaaatttccagcagccataggatagaaatcacagattaacc 24122305  T
Q  325 tgagataagcaaattaggaatacatcattattaacttgtaaaatggatgctttctttgggtgtagtttttacacaatttcattttttggtcaaatagtct 424  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24122306 tgagataagcaaattaggaatacatcattattaacttgtaaaatggatgctttctttgggtgtagtttttacacaatttcattttttggtcaaatagtct 24122405  T
Q  425 ggtggttagaaattcacctcttaaaatgaataactgagataaatgagatgtctatg 480  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  24122406 ggtggttagaaattcacctcttaaaatgaataactgagataagtgagatgtctatg 24122461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 43 - 281
Target Start/End: Original strand, 24132455 - 24132693
Alignment:
Q  43 atagatagtgttcatcaagatctgatacactttgataaagtgtactcaggctgccaaatctcactgcttcaatatctgactccttagccacaagtcttga 142  Q
    ||||||| |||| |||||||||||  ||||||||||| |||| | | | |||||||||| ||||||||||||||||||||||||| |||||||||||||     
T  24132455 atagatattgttgatcaagatctgtcacactttgatacagtgaattaatgctgccaaatatcactgcttcaatatctgactcctttgccacaagtcttgc 24132554  T
Q  143 aatagtacctaatggtaaggttaagaagctgaaaagagcatcaacaaaatccttccctgcttcagcatacacaactttgtttatttctttgtccaccatg 242  Q
    |||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  ||| |||||||||||      
T  24132555 aatagtacctaaaggcaatgttaagaagctgaaaagagcatcaacaaaatccttccctgcttcagcatacacaactttgctcttttgtttgtccaccaaa 24132654  T
Q  243 actctcaaggtaacttcgtcaccttgttcaactgattca 281  Q
    |||||||||||||||| |||||||||||||| |||||||    
T  24132655 actctcaaggtaactttgtcaccttgttcaaatgattca 24132693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 51 - 281
Target Start/End: Original strand, 24232527 - 24232757
Alignment:
Q  51 tgttcatcaagatctgatacactttgataaagtgtactcaggctgccaaatctcactgcttcaatatctgactccttagccacaagtcttgaaatagtac 150  Q
    |||| |||||||| ||| ||||||||||| | ||  || | |||||||||| ||||||||||||||| ||| ||||||||||||| ||||| |||||| |    
T  24232527 tgttgatcaagatttgacacactttgatacaatgagctaatgctgccaaatttcactgcttcaatatttgagtccttagccacaaatcttgcaatagtcc 24232626  T
Q  151 ctaatggtaaggttaagaagctgaaaagagcatcaacaaaatccttccctgcttcagcatacacaactttgtttatttctttgtccaccatgactctcaa 250  Q
    |||| || || |||||||||||||| ||||||||||| ||||||||||| || ||||||||||||||||||||  |||||||||||||||  | |||||     
T  24232627 ctaaaggcaatgttaagaagctgaagagagcatcaacgaaatccttcccagcctcagcatacacaactttgttcttttctttgtccaccaaaattctcag 24232726  T
Q  251 ggtaacttcgtcaccttgttcaactgattca 281  Q
    |  ||| |  ||| |||||||||||||||||    
T  24232727 gcgaacattatcaacttgttcaactgattca 24232757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 25 - 272
Target Start/End: Original strand, 24151095 - 24151342
Alignment:
Q  25 ctttacaggtattggaccatagatagtgttcatcaagatctgatacactttgataaagtgtactcaggctgccaaatctcactgcttcaatatctgactc 124  Q
    |||| |||||||  ||||||||||| |||  ||||||||||   ||||||||||| |||| |||||  || |||||| |||||||||| |||| ||||||    
T  24151095 ctttgcaggtatgtgaccatagatattgtggatcaagatctttcacactttgatatagtgaactcaaactaccaaatttcactgcttcgatatttgactc 24151194  T
Q  125 cttagccacaagtcttgaaatagtacctaatggtaaggttaagaagctgaaaagagcatcaacaaaatccttccctgcttcagcatacacaactttgttt 224  Q
     | |||||| ||||| | |||||||||||| || || |||||||||||||| || |||||||||||||||||||| || |||||  | | ||||||||||    
T  24151195 ttcagccacgagtctagcaatagtacctaaaggaaatgttaagaagctgaagagtgcatcaacaaaatccttcccagcctcagccaatagaactttgttt 24151294  T
Q  225 atttctttgtccaccatgactctcaaggtaacttcgtcaccttgttca 272  Q
     | ||||| || ||||  |||||||||||||||| |||| ||||||||    
T  24151295 ttctctttatcgaccaaaactctcaaggtaactttgtcaacttgttca 24151342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 44 - 269
Target Start/End: Original strand, 24138389 - 24138614
Alignment:
Q  44 tagatagtgttcatcaagatctgatacactttgataaagtgtactcaggctgccaaatctcactgcttcaatatctgactccttagccacaagtcttgaa 143  Q
    |||||| |||| ||||||| |||| ||||||||||| |||| ||| | |||||||||||||||||||||||||| |||||| ||| |||| | || ||      
T  24138389 tagatattgttgatcaagaactgacacactttgatagagtgaacttatgctgccaaatctcactgcttcaatatttgactctttatccacgattcctgcg 24138488  T
Q  144 atagtacctaatggtaaggttaagaagctgaaaagagcatcaacaaaatccttccctgcttcagcatacacaactttgtttatttctttgtccaccatga 243  Q
    ||||||||||| ||||| |||||||| || |||||| ||||||||||||||||  |||| |||| | ||| |||||||||| | || ||||||||||  |    
T  24138489 atagtacctaagggtaatgttaagaaactcaaaagaacatcaacaaaatccttatctgcctcagtaaacagaactttgtttttctccttgtccaccaaaa 24138588  T
Q  244 ctctcaaggtaacttcgtcaccttgt 269  Q
    |||| | ||| |||| |||| |||||    
T  24138589 ctcttagggttactttgtcaacttgt 24138614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 45 - 249
Target Start/End: Complemental strand, 24238263 - 24238059
Alignment:
Q  45 agatagtgttcatcaagatctgatacactttgataaagtgtactcaggctgccaaatctcactgcttcaatatctgactccttagccacaagtcttgaaa 144  Q
    ||||| |||||||||||||||| |||||||||||  |||| ||||||||| |||| | | || ||| | ||||  |||| ||||||| ||||||||| ||    
T  24238263 agatattgttcatcaagatctgctacactttgatgcagtgaactcaggcttccaactgttacagctccgatattcgactgcttagccgcaagtcttgcaa 24238164  T
Q  145 tagtacctaatggtaaggttaagaagctgaaaagagcatcaacaaaatccttccctgcttcagcatacacaactttgtttatttctttgtccaccatgac 244  Q
    |||| ||||| || || |||||||| ||||| |||||||| ||||||||||| ||||| ||||||||||||||||||||  ||| |  ||||||||| ||    
T  24238163 tagttcctaaaggcaatgttaagaaactgaagagagcatcgacaaaatccttgcctgcctcagcatacacaactttgttcctttttccgtccaccataac 24238064  T
Q  245 tctca 249  Q
    |||||    
T  24238063 tctca 24238059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 41 - 249
Target Start/End: Original strand, 24154266 - 24154474
Alignment:
Q  41 ccatagatagtgttcatcaagatctgatacactttgataaagtgtactcaggctgccaaatctcactgcttcaatatctgactccttagccacaagtctt 140  Q
    ||||||||| | ||| | ||||||||| ||||||||||| |||| ||| | |||   |||| | |||||||||||||  ||||| ||||  |||||||||    
T  24154266 ccatagatattcttctttaagatctgaaacactttgatacagtgaactaatgctattaaatttaactgcttcaatattcgactctttagatacaagtctt 24154365  T
Q  141 gaaatagtacctaatggtaaggttaagaagctgaaaagagcatcaacaaaatccttccctgcttcagcatacacaactttgtttatttctttgtccacca 240  Q
    | |||||||||||| || || ||||||||||| || ||| ||||||| ||||||||| ||||||||||||| |||||||| ||  |  ||||||||||||    
T  24154366 gcaatagtacctaaaggcaatgttaagaagcttaacagaacatcaacgaaatccttctctgcttcagcataaacaacttttttcctcgctttgtccacca 24154465  T
Q  241 tgactctca 249  Q
      |||||||    
T  24154466 aaactctca 24154474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 42 - 250
Target Start/End: Complemental strand, 24284217 - 24284008
Alignment:
Q  42 catagatagtgttcatcaagatctgatacactttgataaagtgtactcaggctgccaaatctca-ctgcttcaatatctgactccttagccacaagtctt 140  Q
    |||| ||| |||| ||||||||||  |||||||||||| ||||  || | |||||||||  | | |||||||||||| ||| ||  |||| || ||||||    
T  24284217 cataaatattgttgatcaagatcttttacactttgatacagtgagctaatgctgccaaaattgaactgcttcaatatttgagtctgtagcaacgagtctt 24284118  T
Q  141 gaaatagtacctaatggtaaggttaagaagctgaaaagagcatcaacaaaatccttccctgcttcagcatacacaactttgtttatttctttgtccacca 240  Q
    | |||||| ||||| || ||||| ||||||||||| ||  ||||||||||||||||| ||||||||| ||| | |||||||||  ||||||| |||||||    
T  24284117 gcaatagtccctaagggcaaggtaaagaagctgaagaggacatcaacaaaatccttcactgcttcaggatatagaactttgttactttctttatccacca 24284018  T
Q  241 tgactctcaa 250  Q
    | ||||||||    
T  24284017 taactctcaa 24284008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 39 - 279
Target Start/End: Original strand, 3494819 - 3495059
Alignment:
Q  39 gaccatagatagtgttcatcaagatctgatacactttgataaagtgtactcaggctgccaaatctcactgcttcaatatctgactccttagccacaagtc 138  Q
    ||||||||||| ||||  ||||  | ||| ||||||||||| ||||  || | ||| |||||| ||||||||||||||| ||| |||||||  || | ||    
T  3494819 gaccatagatattgttggtcaaattttgacacactttgatatagtgagctaatgctaccaaatttcactgcttcaatatttgaatccttagaaactaatc 3494918  T
Q  139 ttgaaatagtacctaatggtaaggttaagaagctgaaaagagcatcaacaaaatccttccctgcttcagcatacacaactttgtttatttctttgtccac 238  Q
    ||| |||||||||||  || || |||||||| || || ||| |||| || |||||||| || ||||||||||||| |||| | ||| |||||||||| ||    
T  3494919 ttgcaatagtacctagaggcaatgttaagaaactaaagagaacatcgacgaaatccttaccggcttcagcatacagaactctatttctttctttgtcaac 3495018  T
Q  239 catgactctcaaggtaacttcgtcaccttgttcaactgatt 279  Q
     |  |||| |||| |||||| |||| |||||||||||||||    
T  3495019 taaaactcgcaagctaactttgtcaacttgttcaactgatt 3495059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 30 - 241
Target Start/End: Original strand, 24161168 - 24161379
Alignment:
Q  30 caggtattggaccatagatagtgttcatcaagatctgatacactttgataaagtgtactcaggctgccaaatctcactgcttcaatatctgactccttag 129  Q
    |||||||| ||||| ||||| ||| |||| |||||||| |||||| | || |||| ||| | ||||||||| ||||||||||| |||| |||||| ||||    
T  24161168 caggtatttgaccagagatactgtgcatcgagatctgacacacttaggtacagtgaactaatgctgccaaacctcactgcttccatatttgactctttag 24161267  T
Q  130 ccacaagtcttgaaatagtacctaatggtaaggttaagaagctgaaaagagcatcaacaaaatccttccctgcttcagcatacacaactttgtttatttc 229  Q
      |  ||||  | |||||| ||||  ||||| || ||||||||||||||| |||| ||||||||||| || || |||||||| | |||||| ||  ||||    
T  24161268 atatgagtcaagcaatagtccctagaggtaatgtcaagaagctgaaaagaacatcgacaaaatcctttccagcctcagcatatagaactttcttcctttc 24161367  T
Q  230 tttgtccaccat 241  Q
    ||||||||||||    
T  24161368 tttgtccaccat 24161379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 146 - 263
Target Start/End: Complemental strand, 21194378 - 21194261
Alignment:
Q  146 agtacctaatggtaaggttaagaagctgaaaagagcatcaacaaaatccttccctgcttcagcatacacaactttgtttatttctttgtccaccatgact 245  Q
    ||||||||| || || |||||||||||||| ||| | |||| ||||||||||||||| |||||||||| |||||||||  |||||||||||||||| ||     
T  21194378 agtacctaaaggcaatgttaagaagctgaatagaacttcaataaaatccttccctgcctcagcatacaaaactttgttcctttctttgtccaccataacc 21194279  T
Q  246 ctcaaggtaacttcgtca 263  Q
    ||||| ||||||| ||||    
T  21194278 ctcaatgtaactttgtca 21194261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 39 - 224
Target Start/End: Original strand, 24146118 - 24146303
Alignment:
Q  39 gaccatagatagtgttcatcaagatctgatacactttgataaagtgtactcaggctgccaaatctcactgcttcaatatctgactccttagccacaagtc 138  Q
    ||||| ||||| |||  |||||||||||| ||||||||||| | ||  || | |||||||||| |||||| |||||||| ||| ||||| ||||| |||     
T  24146118 gaccaaagatattgtgtatcaagatctgacacactttgatacaatgagctaatgctgccaaatttcactgattcaatatttgagtcctttgccacgagtt 24146217  T
Q  139 ttgaaatagtacctaatggtaaggttaagaagctgaaaagagcatcaacaaaatccttccctgcttcagcatacacaactttgttt 224  Q
    ||| ||| || ||||| || || | ||||||||| |||||| |||||||||||||||| ||||| || ||| ||| ||||||||||    
T  24146218 ttgcaatggtccctaaaggcaatgataagaagctcaaaagaacatcaacaaaatcctttcctgcctctgcaaacagaactttgttt 24146303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 92 - 213
Target Start/End: Complemental strand, 21199645 - 21199524
Alignment:
Q  92 gctgccaaatctcactgcttcaatatctgactccttagccacaagtcttgaaatagtacctaatggtaaggttaagaagctgaaaagagcatcaacaaaa 191  Q
    |||||||||| |||  ||||||||||  |||||||  | ||| ||||||| |||||| ||||| || || |||||||||| ||| |||||||||||||||    
T  21199645 gctgccaaatttcatagcttcaatattcgactcctcggacactagtcttgcaatagttcctaaaggcaatgttaagaagccgaagagagcatcaacaaaa 21199546  T
Q  192 tccttccctgcttcagcataca 213  Q
    ||||| ||||| ||||||||||    
T  21199545 tcctttcctgcctcagcataca 21199524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 132 - 240
Target Start/End: Original strand, 23342851 - 23342959
Alignment:
Q  132 acaagtcttgaaatagtacctaatggtaaggttaagaagctgaaaagagcatcaacaaaatccttccctgcttcagcatacacaactttgtttatttctt 231  Q
    |||||||||| |||||| ||||| || || ||||||||||| || ||| |||| ||||| ||||| |||||||||||| |||  ||||||||  ||||||    
T  23342851 acaagtcttgcaatagttcctaaaggcaatgttaagaagctaaacagaacatccacaaagtcctttcctgcttcagcaaacaagactttgttggtttctt 23342950  T
Q  232 tgtccacca 240  Q
    ||| |||||    
T  23342951 tgttcacca 23342959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 209
Target Start/End: Original strand, 23348065 - 23348139
Alignment:
Q  135 agtcttgaaatagtacctaatggtaaggttaagaagctgaaaagagcatcaacaaaatccttccctgcttcagca 209  Q
    ||||||| |||||| |||||||| || |||||||| || || ||| |||| ||||| || |||||||||||||||    
T  23348065 agtcttgcaatagttcctaatggcaatgttaagaaactaaatagaacatcgacaaagtctttccctgcttcagca 23348139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 136; Significance: 1e-70; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 30 - 213
Target Start/End: Complemental strand, 28160692 - 28160509
Alignment:
Q  30 caggtattggaccatagatagtgttcatcaagatctgatacactttgataaagtgtactcaggctgccaaatctcactgcttcaatatctgactccttag 129  Q
    ||||||||||||||||||||| |||||||||||||||| || || ||||  ||||||||||||||||||||| ||||||| |||||||||||||||||||    
T  28160692 caggtattggaccatagatagagttcatcaagatctgagacgctatgatgcagtgtactcaggctgccaaatttcactgcgtcaatatctgactccttag 28160593  T
Q  130 ccacaagtcttgaaatagtacctaatggtaaggttaagaagctgaaaagagcatcaacaaaatccttccctgcttcagcataca 213  Q
    |||||||||| ||||||||||||||  |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  28160592 ccacaagtctagaaatagtacctaacagtaaggttaagaagctgaaaagagcaccaacaaaatccttccctgcttcagcataca 28160509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 56 - 279
Target Start/End: Complemental strand, 10989001 - 10988778
Alignment:
Q  56 atcaagatctgatacactttgataaagtgtactcaggctgccaaatctcactgcttcaatatctgactccttagccacaagtcttgaaatagtacctaat 155  Q
    ||||||||||   ||||||||||| |||| ||| | ||| ||||||   ||||||||||||| ||||||  ||||||||||||| | |||||| |||||     
T  10989001 atcaagatctttcacactttgatatagtgaactaatgctaccaaattgaactgcttcaatatttgactctgtagccacaagtctcgcaatagtccctaaa 10988902  T
Q  156 ggtaaggttaagaagctgaaaagagcatcaacaaaatccttccctgcttcagcatacacaactttgtttatttctttgtccaccatgactctcaaggtaa 255  Q
    || || |||||||||||||| ||| ||||||| ||||||||| |||| |||||||||| |||||||||  ||||||| |||||| | |||||||| ||||    
T  10988901 ggcaatgttaagaagctgaagagaacatcaacgaaatccttcactgcctcagcatacagaactttgttactttctttatccaccttaactctcaacgtaa 10988802  T
Q  256 cttcgtcaccttgttcaactgatt 279  Q
     || |||| ||| |||||| ||||    
T  10988801 ttttgtcaacttcttcaacagatt 10988778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 82; Significance: 2e-38; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 58 - 275
Target Start/End: Complemental strand, 15380360 - 15380143
Alignment:
Q  58 caagatctgatacactttgataaagtgtactcaggctgccaaatctcactgcttcaatatctgactccttagccacaagtcttgaaatagtacctaatgg 157  Q
    ||||||| ||||||||||  || | ||  |||| ||| |||||| ||||||| || |||| ||||||||||||| ||||||||| |||||| ||||| ||    
T  15380360 caagatccgatacactttcgtacaatgagctcaagcttccaaatttcactgcgtcgatatttgactccttagccgcaagtcttgcaatagtccctaaagg 15380261  T
Q  158 taaggttaagaagctgaaaagagcatcaacaaaatccttccctgcttcagcatacacaactttgtttatttctttgtccaccatgactctcaaggtaact 257  Q
     ||  |||||||||||||||||| ||||||||||||||||||||| ||  |||| | |||||||||  ||||| | |||||||| | ||||||| |||||    
T  15380260 aaatattaagaagctgaaaagagtatcaacaaaatccttccctgcctctacatatagaactttgttcctttctctatccaccataaatctcaagctaact 15380161  T
Q  258 tcgtcaccttgttcaact 275  Q
    |||||| |||||||||||    
T  15380160 tcgtcaacttgttcaact 15380143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 39 - 279
Target Start/End: Complemental strand, 3151263 - 3151024
Alignment:
Q  39 gaccatagatagtgttcatcaagatctgatacactttgataaagtgtactcaggctgccaaatctcactgcttcaatatctgactccttagccacaagtc 138  Q
    ||||||||||| |||| ||||||||| ||||||| | |||| | ||  || | |||||||| | ||||||||||||||| |||||||| ||  |  ||||    
T  3151263 gaccatagatattgttgatcaagatccgatacacctcgatacaatgagcttatgctgccaagtttcactgcttcaatatttgactcctgagaaatgagtc 3151164  T
Q  139 ttgaaatagtacctaatggtaaggttaagaagctgaaaagagcatcaacaaaatccttccctgcttcagcatacacaactttgtttatttctttgtccac 238  Q
    ||| |||||| ||||  ||||| ||||| || || |||||| |||| || ||||||||||| || |||||||| | ||||| |||  |||||||||||||    
T  3151163 ttgcaatagtccctagaggtaatgttaaaaaactcaaaagaacatcgacgaaatccttcccagcctcagcatatagaactt-gttcctttctttgtccac 3151065  T
Q  239 catgactctcaaggtaacttcgtcaccttgttcaactgatt 279  Q
    ||| | ||||||| |||||| |||| |||||||||| ||||    
T  3151064 cataattctcaagctaactttgtcaacttgttcaacggatt 3151024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 406 - 462
Target Start/End: Complemental strand, 1861486 - 1861430
Alignment:
Q  406 ttttttggtcaaatagtctggtggttagaaattcacctcttaaaatgaataactgag 462  Q
    |||||| ||||| |||||| |||| || |||||||||||||||||||||||| ||||    
T  1861486 tttttttgtcaagtagtcttgtggctaaaaattcacctcttaaaatgaataagtgag 1861430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 132 - 172
Target Start/End: Original strand, 1157403 - 1157443
Alignment:
Q  132 acaagtcttgaaatagtacctaatggtaaggttaagaagct 172  Q
    |||||||||| ||| ||||||||||||||||||||||||||    
T  1157403 acaagtcttgcaatggtacctaatggtaaggttaagaagct 1157443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 414 - 457
Target Start/End: Complemental strand, 29484975 - 29484932
Alignment:
Q  414 tcaaatagtctggtggttagaaattcacctcttaaaatgaataa 457  Q
    ||||||||||| |||| |||| ||||||||||||||||||||||    
T  29484975 tcaaatagtctagtggctagatattcacctcttaaaatgaataa 29484932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 409 - 457
Target Start/End: Original strand, 24284213 - 24284261
Alignment:
Q  409 tttggtcaaatagtctggtggttagaaattcacctcttaaaatgaataa 457  Q
    |||| |||||||| || |||| |||| ||||||||||||||||||||||    
T  24284213 tttgttcaaatagcctagtggctagacattcacctcttaaaatgaataa 24284261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 403 - 457
Target Start/End: Complemental strand, 2233224 - 2233170
Alignment:
Q  403 tcattttttggtcaaatagtctggtggttagaaattcacctcttaaaatgaataa 457  Q
    |||||||||||||||||| | |  |||||| ||||||| ||||||||||||||||    
T  2233224 tcattttttggtcaaataatttattggttaaaaattcaactcttaaaatgaataa 2233170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University