View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11171A_low_71 (Length: 329)
Name: NF11171A_low_71
Description: NF11171A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11171A_low_71 |
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Alignment Details
Target: chr1 (Bit Score: 285; Significance: 1e-160; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 7 - 307
Target Start/End: Original strand, 38566984 - 38567284
Alignment:
| Q |
7 |
tttcgtgttaattccatcgataagaacttcacctgcctgtggatcatagaatctctctaccaaattgataattgtcgactttcgagttccactttgtcca |
106 |
Q |
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| T |
38566984 |
tttcatgttaattccatcgataagaacttcacctgcctgtggatcatagaatctctctaccaaactgataattgtcgactttccacttccactttgtcca |
38567083 |
T |
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| Q |
107 |
accaatgctgtggttgttccgctcggtatatgaagagagaatccattaaatatcagctcctcaggtcttgccggataactgaaataaacttctttcaact |
206 |
Q |
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| T |
38567084 |
accaatgctgtggttgttccgctcggtatatgaagagagaatccattaaatatcagctcctcaggtcttgccggataactgaaataaacttctttcaact |
38567183 |
T |
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| Q |
207 |
ctatttcaccttgaatatcctctaatatttttccatttggatcataagcatctatctctggcctccttttaattgtctcaaacattttgtaagccgccgc |
306 |
Q |
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| T |
38567184 |
ctatttcaccttgaatatcctctaatatttttccatttggatcataagcatctatctctggcctccttttaattgtctcaaacattttgtaagccgccgc |
38567283 |
T |
|
| Q |
307 |
c |
307 |
Q |
| |
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| T |
38567284 |
c |
38567284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 7 - 310
Target Start/End: Original strand, 38525859 - 38526162
Alignment:
| Q |
7 |
tttcgtgttaattccatcgataagaacttcacctgcctgtggatcatagaatctctctaccaaattgataattgtcgactttcgagttccactttgtcca |
106 |
Q |
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|||| ||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||| | |||| ||| ||||||| | |||||||||||||| |
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| T |
38525859 |
tttcatgttaattccatcgataagtacttcaccggcctgtggatcatagaatctttctaccaaactaataactgtggactttccacttccactttgtcca |
38525958 |
T |
|
| Q |
107 |
accaatgctgtggttgttccgctcggtatatgaagagagaatccattaaatatcagctcctcaggtcttgccggataactgaaataaacttctttcaact |
206 |
Q |
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| T |
38525959 |
accaatgccgcggttgttccgcttgatatatgaagagagaatccattgaatatcagctcctcaggtcttgccggataactgaaataaacttctttcaact |
38526058 |
T |
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| Q |
207 |
ctatttcaccttgaatatcctctaatatttttccatttggatcataagcatctatctctggcctccttttaattgtctcaaacattttgtaagccgccgc |
306 |
Q |
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| T |
38526059 |
ctatctcaccttgaatatcctctaatatttttccatttggatcataagcatctatctctggcctccttttaattgtctcaaacattttgtaagccgccgc |
38526158 |
T |
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| Q |
307 |
ctga |
310 |
Q |
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|||| |
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| T |
38526159 |
ctga |
38526162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 111
Target Start/End: Complemental strand, 51199554 - 51199472
Alignment:
| Q |
29 |
agaacttcacctgcctgtggatcatagaatctctctaccaaattgataattgtcgactttcgagttccactttgtccaaccaa |
111 |
Q |
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||||||||||| |||||||||||||| |||||||||| |||| ||| || ||| || |||| | | |||||||| || ||||| |
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| T |
51199554 |
agaacttcaccagcctgtggatcataaaatctctctatcaaactgacaactgtggattttccactcccactttgccctaccaa |
51199472 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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