View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11171A_low_73 (Length: 328)

Name: NF11171A_low_73
Description: NF11171A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11171A_low_73
NF11171A_low_73
[»] chr1 (11 HSPs)
chr1 (28-328)||(32166464-32166765)
chr1 (201-328)||(32156272-32156399)
chr1 (201-314)||(32163590-32163703)
chr1 (205-299)||(27362738-27362832)
chr1 (46-118)||(27261306-27261378)
chr1 (224-309)||(27333956-27334041)
chr1 (52-118)||(27276359-27276425)
chr1 (227-299)||(27261431-27261503)
chr1 (227-299)||(27336457-27336529)
chr1 (29-111)||(36485005-36485088)
chr1 (242-299)||(27319756-27319813)
[»] chr4 (1 HSPs)
chr4 (242-324)||(44292003-44292085)


Alignment Details
Target: chr1 (Bit Score: 274; Significance: 1e-153; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 28 - 328
Target Start/End: Original strand, 32166464 - 32166765
Alignment:
Q  28 aactcaaaagcaatcaccagaccaatttattcaacttaataaatcctacaacactcaaaccaagatttgtgtatatcaaatacacaaaatgctcaggact 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32166464 aactcaaaagcaatcaccagaccaatttattcaacttaataaatcctacaacactcaaaccaagatttgtgtatatcaaatacacaaaatgctcaggact 32166563  T
Q  128 agaccaaaataattaagtgctccaataacaattttatcatttgatagtaa-tattacatgtattggtgcatgtatttgactgcaatgttaggactaggac 226  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  32166564 agaccaaaataattaagtgctccaataacaattttatcatctgatagtaattattacatgtattggtgcatgtatttgactgcaatgttaggactaggac 32166663  T
Q  227 taaaccaaaacagatccttccatcactgtaacagccttcccacgcaaaaacactctttgtttttgttcatcaatttgaatattcagaattccccctctag 326  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||    
T  32166664 tagaccaaaacagatccttccatcactgtaacagccttcccacgcaaaaaaactctttgtttttgttcatcaatatgaatattgagaattccccctctag 32166763  T
Q  327 ct 328  Q
    ||    
T  32166764 ct 32166765  T

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Target: chr1; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 201 - 328
Target Start/End: Original strand, 32156272 - 32156399
Alignment:
Q  201 tttgactgcaatgttaggactaggactaaaccaaaacagatccttccatcactgtaacagccttcccacgcaaaaacactctttgtttttgttcatcaat 300  Q
    |||||||| |||||||| | |||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32156272 tttgactgaaatgttagaaataggactagaccaaaacacacccttccatcactgtaacagccttcccacgcaaaaacactctttgtttttgttcatcaat 32156371  T
Q  301 ttgaatattcagaattccccctctagct 328  Q
     |||||||| ||||||||||||||||||    
T  32156372 atgaatattgagaattccccctctagct 32156399  T

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Target: chr1; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 201 - 314
Target Start/End: Original strand, 32163590 - 32163703
Alignment:
Q  201 tttgactgcaatgttaggactaggactaaaccaaaacagatccttccatcactgtaacagccttcccacgcaaaaacactctttgtttttgttcatcaat 300  Q
    |||||||||||||||| || | ||| || ||||||||| | |||||||| ||||||| |||||||||||| ||||||||||||||||| |||||||||||    
T  32163590 tttgactgcaatgttaagaattggattagaccaaaacacacccttccataactgtaatagccttcccacgtaaaaacactctttgtttctgttcatcaat 32163689  T
Q  301 ttgaatattcagaa 314  Q
     |||||||| ||||    
T  32163690 atgaatattgagaa 32163703  T

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Target: chr1; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 205 - 299
Target Start/End: Complemental strand, 27362832 - 27362738
Alignment:
Q  205 actgcaatgttaggactaggactaaaccaaaacagatccttccatcactgtaacagccttcccacgcaaaaacactctttgtttttgttcatcaa 299  Q
    ||||||||| |||||  | | ||| |||| |||| | |||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||    
T  27362832 actgcaatgctaggaacaagcctagaccagaacacacccttccatcactataatagccttcccacgcaaaaacactctttgtttttgctcatcaa 27362738  T

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Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 46 - 118
Target Start/End: Original strand, 27261306 - 27261378
Alignment:
Q  46 agaccaatttattcaacttaataaatcctacaacactcaaaccaagatttgtgtatatcaaatacacaaaatg 118  Q
    |||||||||||||||| | |||||||||||||||||||| || | | |||||| |||| ||||||||||||||    
T  27261306 agaccaatttattcaaatcaataaatcctacaacactcacacaatggtttgtgaatatgaaatacacaaaatg 27261378  T

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Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 224 - 309
Target Start/End: Complemental strand, 27334041 - 27333956
Alignment:
Q  224 gactaaaccaaaacagatccttccatcactgtaacagccttcccacgcaaaaacactctttgtttttgttcatcaatttgaatatt 309  Q
    ||||| |||| |||| | |||||||| || |||| |||||| ||||| | |||||||||||| |||||||||||||| ||||||||    
T  27334041 gactagaccagaacacacccttccataacagtaatagcctttccacgaataaacactctttgattttgttcatcaatatgaatatt 27333956  T

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Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 118
Target Start/End: Complemental strand, 27276425 - 27276359
Alignment:
Q  52 atttattcaacttaataaatcctacaacactcaaaccaagatttgtgtatatcaaatacacaaaatg 118  Q
    |||||||||| | |||||||||||||||||||| || | | |||||| |||| ||||||||||||||    
T  27276425 atttattcaaatcaataaatcctacaacactcacacaatggtttgtgaatatgaaatacacaaaatg 27276359  T

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Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 299
Target Start/End: Original strand, 27261431 - 27261503
Alignment:
Q  227 taaaccaaaacagatccttccatcactgtaacagccttcccacgcaaaaacactctttgtttttgttcatcaa 299  Q
    ||||||| |||| | ||||  ||||| || || |||||||||||||||||||| ||||||||||||| |||||    
T  27261431 taaaccagaacataccctttaatcaccgttacggccttcccacgcaaaaacaccctttgtttttgtttatcaa 27261503  T

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Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 299
Target Start/End: Original strand, 27336457 - 27336529
Alignment:
Q  227 taaaccaaaacagatccttccatcactgtaacagccttcccacgcaaaaacactctttgtttttgttcatcaa 299  Q
    ||||||| |||| | ||||| ||||| || || |||||||||||||||||||| |||||||| |||| |||||    
T  27336457 taaaccagaacatacccttcaatcaccgttacggccttcccacgcaaaaacaccctttgtttctgtttatcaa 27336529  T

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Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 29 - 111
Target Start/End: Complemental strand, 36485088 - 36485005
Alignment:
Q  29 actcaaaagcaatcaccagaccaatttattcaacttaataaatcctacaacactcaaaccaa-gatttgtgtatatcaaataca 111  Q
    |||| |||||||| |||  | ||||||||| |||| |||||||||||| ||||||| ||||| | ||||||||||| |||||||    
T  36485088 actcgaaagcaattaccgaatcaatttatttaactcaataaatcctactacactcacaccaaggttttgtgtatataaaataca 36485005  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 299
Target Start/End: Original strand, 27319756 - 27319813
Alignment:
Q  242 ccttccatcactgtaacagccttcccacgcaaaaacactctttgtttttgttcatcaa 299  Q
    ||||| ||||| |||||  ||||||||||||||||||| |||||||| |||| |||||    
T  27319756 ccttcaatcaccgtaacgcccttcccacgcaaaaacaccctttgtttctgtttatcaa 27319813  T

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Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 242 - 324
Target Start/End: Complemental strand, 44292085 - 44292003
Alignment:
Q  242 ccttccatcactgtaacagccttcccacgcaaaaacactctttgtttttgttcatcaatttgaatattcagaattccccctct 324  Q
    |||||||||||||||| ||| ||||||||||||||||||||||| ||  |||||||||| |||||||| |||| |||||||||    
T  44292085 ccttccatcactgtaatagctttcccacgcaaaaacactctttgcttgcgttcatcaatatgaatattgagaactccccctct 44292003  T

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