View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11171A_low_78 (Length: 321)
Name: NF11171A_low_78
Description: NF11171A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11171A_low_78 |
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| [»] scaffold0618 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 11 - 315
Target Start/End: Original strand, 13960318 - 13960622
Alignment:
| Q |
11 |
cagagaaacatcaagcagttgcactccgagtaacagcagacaaagcaatcttctacaactgccaaatagatggttaccaagcaacactcttcgccgaatc |
110 |
Q |
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| T |
13960318 |
cagagaaacatcaagcagttgcactccgagtaacagcagacaaagcaatcttctacaactgccaaatagatggttaccaagcaacactcttcgccgaatc |
13960417 |
T |
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| Q |
111 |
ccaacgtcaattctaccgtgactgcagcatctctggcacaatcgacatgatctacggtgacgcctttgcagttttccaaaactgcaaactaatcgtaaga |
210 |
Q |
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| T |
13960418 |
ccaacgtcaattctaccgtgactgcagcatctctggcacaatcgacatgatctacggtgacgcctttgcagttttccaaaactgcaaactaatcgtaaga |
13960517 |
T |
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| Q |
211 |
aaaccattagaagaacaacaatgtttcgtagctgccgatggaagaaccaaatccgacagctcaagtggctttgttttccaaagttgtcatttcacaggtg |
310 |
Q |
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| T |
13960518 |
aaaccattagaagaacaacaatgtttcgtagctgccgatggaagaaccaaatctgacagctcaagtggctttgttttccaaagttgtcatttcacaggtg |
13960617 |
T |
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| Q |
311 |
cacta |
315 |
Q |
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| T |
13960618 |
cacta |
13960622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 20 - 203
Target Start/End: Original strand, 13967491 - 13967674
Alignment:
| Q |
20 |
atcaagcagttgcactccgagtaacagcagacaaagcaatcttctacaactgccaaatagatggttaccaagcaacactcttcgccgaatcccaacgtca |
119 |
Q |
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| T |
13967491 |
atcaagcagttgccctccgagtaacagcagatcaagcaatattccacaactgtcaaatggacggtttccaagacacactctacgtccaatcccaacgtca |
13967590 |
T |
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| Q |
120 |
attctaccgtgactgcagcatctctggcacaatcgacatgatctacggtgacgcctttgcagttttccaaaactgcaaactaat |
203 |
Q |
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| T |
13967591 |
attctaccgtgactgcgccatctctggcacaatcgactttgtttttggcgacgcctttggagttttccaaaattgcaaactaat |
13967674 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 19 - 216
Target Start/End: Complemental strand, 49871189 - 49870992
Alignment:
| Q |
19 |
catcaagcagttgcactccgagtaacagcagacaaagcaatcttctacaactgccaaatagatggttaccaagcaacactcttcgccgaatcccaacgtc |
118 |
Q |
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| T |
49871189 |
catcaagcagtggccctccgtgtaacagcagacaaagcattgttctacaactgtgaaatgaacggttaccaagatacactctacacacaatccaaaagac |
49871090 |
T |
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| Q |
119 |
aattctaccgtgactgcagcatctctggcacaatcgacatgatctacggtgacgcctttgcagttttccaaaactgcaaactaatcgtaagaaaacca |
216 |
Q |
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| T |
49871089 |
aattctaccgcgactgcaccattaccggaacaatcgactttgtctttggtgatgcagttggagttttccaaaactgcaaactcatcgttagaaaacca |
49870992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 22 - 136
Target Start/End: Complemental strand, 49865249 - 49865135
Alignment:
| Q |
22 |
caagcagttgcactccgagtaacagcagacaaagcaatcttctacaactgccaaatagatggttaccaagcaacactcttcgccgaatcccaacgtcaat |
121 |
Q |
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| T |
49865249 |
caagcagtggccctccgtgtaacagcagacaaagcattgttctacaactgtcaaatggacggttaccaagatacactctacacacaatccaaaagacaat |
49865150 |
T |
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| Q |
122 |
tctaccgtgactgca |
136 |
Q |
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| T |
49865149 |
tctaccgcgactgca |
49865135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0618 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0618
Description:
Target: scaffold0618; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 155
Target Start/End: Original strand, 6835 - 6875
Alignment:
| Q |
115 |
cgtcaattctaccgtgactgcagcatctctggcacaatcga |
155 |
Q |
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| T |
6835 |
cgtcaattctaccgtgactgcaacatctatggaacaatcga |
6875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 155
Target Start/End: Complemental strand, 44067770 - 44067730
Alignment:
| Q |
115 |
cgtcaattctaccgtgactgcagcatctctggcacaatcga |
155 |
Q |
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| T |
44067770 |
cgtcaattctaccgtgactgcaacatctatggaacaatcga |
44067730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 155
Target Start/End: Original strand, 44087534 - 44087574
Alignment:
| Q |
115 |
cgtcaattctaccgtgactgcagcatctctggcacaatcga |
155 |
Q |
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| T |
44087534 |
cgtcaattctaccgtgactgcaacatctatggaacaatcga |
44087574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 155
Target Start/End: Complemental strand, 44093076 - 44093036
Alignment:
| Q |
115 |
cgtcaattctaccgtgactgcagcatctctggcacaatcga |
155 |
Q |
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| T |
44093076 |
cgtcaattctaccgtgactgcaacatctatggaacaatcga |
44093036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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