View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11171A_low_8 (Length: 487)
Name: NF11171A_low_8
Description: NF11171A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11171A_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 11 - 480
Target Start/End: Complemental strand, 9967061 - 9966592
Alignment:
| Q |
11 |
cagagatgcgtgaagatgaaacggtgagagttggttcagaaagtataaaagaaaatggcaatccaaattttcctgggaccgacaatgctgggaacgatcc |
110 |
Q |
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| T |
9967061 |
cagagatgagtgaagatgaaacggtgagagttggttcagaaagtataaaagaaaatggcaatccaaattttcctgggaccgacaatgctgggaacgatcc |
9966962 |
T |
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| Q |
111 |
aaatcaaattgttggttccaacattagcaccagcagtagcgaaatgaacatggatgatgagaaaacgttcagcattttgattcggggaagaagaaaccga |
210 |
Q |
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| T |
9966961 |
aaatcaaattgtcggttccaacattagcaccagcagtagcgaaatgaacatggatgatgagaaaacgttcagcattttgattcggggaagaagaaaccga |
9966862 |
T |
|
| Q |
211 |
aagcaaacactaagaatgccaataagtttgcttactcgacctcatggctctcagtcgtttaaggttatctataaccgtgtagttagaggaaatgattctc |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
9966861 |
aagcaaacactaagaatgccaataagtttgcttactcgacctcatggctctcagtcgtttaaggttatctataaccgtgtcgttagaggaaatgattctc |
9966762 |
T |
|
| Q |
311 |
ccaggtccatgaatttctcttctagtaaaccttgtacagctactgcttaacccacagtactttgttgttgctaatgaattgtagcaattattgtggatat |
410 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9966761 |
ccaggtccatgaatttctcttctagtaaacattgtacagctactgcttaacccacagtactttgttgttgctaatgaattgtagcaattattgtggatat |
9966662 |
T |
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| Q |
411 |
agaagaactctagctcaaaatttctcgtgaagcctcgtggtatttcatcttttgtggatccattacaaat |
480 |
Q |
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|||||||||||| ||||||| |||||||||||| ||| ||||||||||| ||||||||| |||||||||| |
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| T |
9966661 |
agaagaactctacctcaaaagttctcgtgaagcatcgcggtatttcatcatttgtggattcattacaaat |
9966592 |
T |
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