View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11171A_low_85 (Length: 311)
Name: NF11171A_low_85
Description: NF11171A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11171A_low_85 |
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Alignment Details
Target: chr2 (Bit Score: 296; Significance: 1e-166; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 10 - 305
Target Start/End: Original strand, 35275169 - 35275464
Alignment:
| Q |
10 |
aaaaaccaaaatcaattcacaatcctgcaattctttctgatctcaccattagtcccagtaagaggactaattttactcatcttcaccatagcagcagcaa |
109 |
Q |
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| T |
35275169 |
aaaaaccaaaatcaattcacaatcctgcaattctttctgatctcaccattagtcccagtaagaggactaattttactcatcttcaccatagcagcagcaa |
35275268 |
T |
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| Q |
110 |
agtctctagaaaaagcagcaccatctctactatacttcctaaccaaagaaatttgagaaccaccaccattgaaaagaacttgatcagaatgtagaagacc |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35275269 |
agtctctagaaaaagcagcaccatctctactatacttcctaaccaaagaaatttgagaaccaccaccattgaaaagaacttgatcagaatgtagaagacc |
35275368 |
T |
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| Q |
210 |
tttattagcaataaggtccttataataattgttgtcaaatttagttggagtgacagaatcaaagggtgctaaattggtgtcaccaccagaggtagg |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35275369 |
tttattagcaataaggtccttataataattgttgtcaaatttagttggagtgacagaatcaaagggtgctaaattggtgtcaccaccagaggtagg |
35275464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 25 - 305
Target Start/End: Original strand, 35289296 - 35289576
Alignment:
| Q |
25 |
ttcacaatcctgcaattctttctgatctcaccattagtcccagtaagaggactaattttactcatcttcaccatagcagcagcaaagtctctagaaaaag |
124 |
Q |
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| T |
35289296 |
ttcacaagcctgcaattctttctaatctccccattagtcccagttagaggactaattctactcatcttcaccatagcagctgcaaagtctcttttaaaag |
35289395 |
T |
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| Q |
125 |
cagcaccatctctactatacttcctaaccaaagaaatttgagaaccaccaccattgaaaagaacttgatcagaatgtagaagacctttattagcaataag |
224 |
Q |
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| T |
35289396 |
caatattatttctactataagtcctaaccaaagaaacttgagaaccaacaccattgaaaagagcttgatcagaatgaagaagtcctttattagcaacaag |
35289495 |
T |
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| Q |
225 |
gtccttataataattgttgtcaaatttagttggagtgacagaatcaaagggtgctaaattggtgtcaccaccagaggtagg |
305 |
Q |
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| T |
35289496 |
gtcattatagtaattgttgtcaaaagtaactggagagacagaatcaagaggtgccaaatttatgtcaccaccagaagtagg |
35289576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 20 - 299
Target Start/End: Original strand, 35307092 - 35307368
Alignment:
| Q |
20 |
atcaattcacaatcctgcaattctttctgatctcaccattagtcccagtaagaggactaattttactcatcttcaccatagcagcagcaaagtctctaga |
119 |
Q |
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| T |
35307092 |
atcaattcacaagcctgcaattctttctaatctccccattagtcccagttagaggactaattttactcagtttcaccatagcaacggcaaagtctctaga |
35307191 |
T |
|
| Q |
120 |
aaaagcagcaccatctctactatacttcctaaccaaagaaatttgagaaccaccaccattgaaaagaacttgatcagaatgtagaagacctttattagca |
219 |
Q |
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||||| |||||||| ||||||| ||||||||||| | |||||| ||| |||||||||| ||||||||||||| | ||||||||| | ||| |
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| T |
35307192 |
aaaagtagcaccattggtactataactcctaaccaaattatcttgaga---cccattattgaaaagagcttgatcagaatggaaaagacctttgcttgca |
35307288 |
T |
|
| Q |
220 |
ataaggtccttataataattgttgtcaaatttagttggagtgacagaatcaaagggtgctaaattggtgtcaccaccaga |
299 |
Q |
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| T |
35307289 |
acaaggtttttatagtaattgttatcaaaacttgttggagtgagagtatcaagtggtgctaaattggtgtcaccaccaga |
35307368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 20 - 291
Target Start/End: Original strand, 35311435 - 35311703
Alignment:
| Q |
20 |
atcaattcacaatcctgcaattctttctgatctcaccattagtcccagtaagaggactaattttactcatcttcaccatagcagcagcaaagtctctaga |
119 |
Q |
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|||||||||||| ||| ||||||||||||||||| |||||||||||||| |||||||| |||||||||| |||||||||||||||||||||||| |||| |
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| T |
35311435 |
atcaattcacaagcctacaattctttctgatctccccattagtcccagtgagaggactgattttactcagtttcaccatagcagcagcaaagtctgtaga |
35311534 |
T |
|
| Q |
120 |
aaaagcagcaccatctctactatacttcctaaccaaagaaatttgagaaccaccaccattgaaaagaacttgatcagaatgtagaagacctttattagca |
219 |
Q |
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||||||||| ||| ||||||| ||||||||||| | |||||| ||| ||||||||| |||||||||||||| | |||||||| | ||| |
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| T |
35311535 |
aaaagcagcctcattggtactataactcctaaccaaattatcttgaga---cccattattgaaaaggacttgatcagaatggaatagacctttgcttgca |
35311631 |
T |
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| Q |
220 |
ataaggtccttataataattgttgtcaaatttagttggagtgacagaatcaaagggtgctaaattggtgtca |
291 |
Q |
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| T |
35311632 |
acaaggtttttataataattgttgtcaaaacttgttggagtgagagtatcaagtggtgctaaattggtgtca |
35311703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 23 - 299
Target Start/End: Original strand, 35279949 - 35280225
Alignment:
| Q |
23 |
aattcacaatcctgcaattctttctgatctcaccattagtcccagtaagaggactaattttactcatcttcaccatagcagcagcaaagtctctagaaaa |
122 |
Q |
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||||||||| |||||||||||||| || || ||||||||||| || |||||||||||| | |||||||||||||||||| |||||||||||| ||| |
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| T |
35279949 |
aattcacaagtctgcaattctttctaatttccccattagtccctgtgagaggactaattctgctcatcttcaccatagcaaaagcaaagtctcttctaaa |
35280048 |
T |
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| Q |
123 |
agcagcaccatctctactatacttcctaaccaaagaaatttgagaaccaccaccattgaaaagaacttgatcagaatgtagaagacctttattagcaata |
222 |
Q |
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|||| ||||| | ||||||| |||||||||||||| | |||||||| ||||||||||||| |||||||||||| ||||| ||||||||||||| |
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| T |
35280049 |
agcaaaaccatttatactataagccctaaccaaagaaactggagaaccaacaccattgaaaagtgcttgatcagaattaagaagtcctttattagcaact |
35280148 |
T |
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| Q |
223 |
aggtccttataataattgttgtcaaatttagttggagtgacagaatcaaagggtgctaaattggtgtcaccaccaga |
299 |
Q |
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|| ||| ||||||||||||||||||| || |||| ||||||||||| || || ||||| |||||||| ||||| |
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| T |
35280149 |
agatccctataataattgttgtcaaaagtaacaggagagacagaatcaagaggagccaaatttgtgtcaccgccaga |
35280225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 20 - 299
Target Start/End: Original strand, 35322093 - 35322369
Alignment:
| Q |
20 |
atcaattcacaatcctgcaattctttctgatctcaccattagtcccagtaagaggactaattttactcatcttcaccatagcagcagcaaagtctctaga |
119 |
Q |
| |
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|||||||||||| ||| ||||||||||| ||||| |||||||||||||| |||||| |||||||||||| |||||||||||| ||||||||||||| |
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| T |
35322093 |
atcaattcacaagcctacaattctttctaatctccccattagtcccagttagaggattaattttactcagtttcaccatagcaacagcaaagtctcttct |
35322192 |
T |
|
| Q |
120 |
aaaagcagcaccatctctactatacttcctaaccaaagaaatttgagaaccaccaccattgaaaagaacttgatcagaatgtagaagacctttattagca |
219 |
Q |
| |
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||||| |||||||| ||||||| ||||||||||| | |||||| ||| |||||||||| ||||||||||||| | ||||||||| | ||| |
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| T |
35322193 |
aaaagtagcaccattggtactataactcctaaccaaattatcttgaga---cccattattgaaaagagcttgatcagaatggaaaagacctttgcttgca |
35322289 |
T |
|
| Q |
220 |
ataaggtccttataataattgttgtcaaatttagttggagtgacagaatcaaagggtgctaaattggtgtcaccaccaga |
299 |
Q |
| |
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| ||| | ||||| |||||||||||||| || |||||||||| || |||| |||||||||||||||||||||||||| |
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| T |
35322290 |
acaagatttttatagtaattgttgtcaaaatttgttggagtgagagtgtcaagaggtgctaaattggtgtcaccaccaga |
35322369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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