View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11171A_low_89 (Length: 304)
Name: NF11171A_low_89
Description: NF11171A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11171A_low_89 |
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Alignment Details
Target: chr8 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 19 - 294
Target Start/End: Original strand, 6484883 - 6485158
Alignment:
| Q |
19 |
acttgttataccttgtgttacatttaacttatttacaaagaatatagtagaagattcaggctcttgaaaactaatgggtttttaataccatgtcaaagtc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6484883 |
acttgttataccttgtgttacatttaacttatttacaaagaatatagtagaagattcaggctcttgaaaactaatgggtttttaataccatgtcaaagtc |
6484982 |
T |
|
| Q |
119 |
caactctcctaaaacacttcactgccgtctgctgcattatttatcttgttttgatcttttgtttgccccttacacccttacagggagaggctaggttatg |
218 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||| |
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| T |
6484983 |
caactctcctaaaacacttcactgctgtctgctgcattatttatcttgttttgaacttgtgtttgccccttacacccttacagggagaggttaggttatg |
6485082 |
T |
|
| Q |
219 |
tacttgattgttacccaaaaatctcattgtttggagaaaagttctgtttttccaaaagttacgaggattttatatt |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
6485083 |
tacttgattgttacccaaaaatctcattgtttggagaatagttctgtttttccaaaagttacgaggattttatatt |
6485158 |
T |
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