View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11171A_low_9 (Length: 480)
Name: NF11171A_low_9
Description: NF11171A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11171A_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-113; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 138 - 405
Target Start/End: Complemental strand, 7617833 - 7617568
Alignment:
| Q |
138 |
ttatatctgagtcagacatggtgcttaaccttaaaaattgtctggtcttaatttatgtttgtactttgttgttcaaagcaaaacnnnnnnnntggtaatt |
237 |
Q |
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| T |
7617833 |
ttatatctgagtcagacatggtgcttaaccttaaaaattgtctggtcttaatttatgtttgtactttgttgttcaaagcaaaacaaaaaaaatggtaatt |
7617734 |
T |
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| Q |
238 |
gttatgtgtagctgcatataagaaatcaatgatgcatgtgatttcaatgaatgtgtgaagccaatagggtgtgcttttataagcttctgttctgtcttta |
337 |
Q |
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| T |
7617733 |
gttatgtgtagttgcatataagaaatcaatgatgcatgtgatttcaatgaatgtgtgaagccaatagggtgtgcttttataagcttctgttctgtcttta |
7617634 |
T |
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| Q |
338 |
aagtgnnnnnnnnnccggaaagtagcagcgaaattggctttacactatggaaaaacagtgcactttgc |
405 |
Q |
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| T |
7617633 |
aagtg--aaaaaaaccggaaagtagcagcgaaattggctttacactatggaaaaacagtgcactttgc |
7617568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 7 - 80
Target Start/End: Complemental strand, 7617964 - 7617891
Alignment:
| Q |
7 |
aatagtttctccaatgaaaggccaacccattcttcctggtggaagattaaggttgggtttggcttgttttgttt |
80 |
Q |
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| T |
7617964 |
aatagtttctccaatgaaaggccaacccattcttcctggtggaagattaaggttgggtttggcttgttttgttt |
7617891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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