View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11171A_low_90 (Length: 303)

Name: NF11171A_low_90
Description: NF11171A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11171A_low_90
NF11171A_low_90
[»] chr6 (9 HSPs)
chr6 (176-288)||(3242626-3242738)
chr6 (46-109)||(3242499-3242562)
chr6 (7-49)||(3242444-3242486)
chr6 (46-89)||(6160683-6160726)
chr6 (48-89)||(21598962-21599003)
chr6 (58-91)||(26400879-26400912)
chr6 (59-91)||(11982567-11982599)
chr6 (46-106)||(12184511-12184571)
chr6 (54-90)||(12602036-12602072)
[»] chr8 (13 HSPs)
chr8 (49-109)||(12800895-12800955)
chr8 (56-98)||(31888039-31888081)
chr8 (46-91)||(32421572-32421617)
chr8 (46-89)||(10982729-10982772)
chr8 (45-87)||(15020763-15020805)
chr8 (46-87)||(10601766-10601807)
chr8 (46-91)||(10871907-10871952)
chr8 (46-91)||(17898082-17898127)
chr8 (48-89)||(37141362-37141403)
chr8 (46-91)||(40482342-40482387)
chr8 (46-91)||(40795380-40795425)
chr8 (46-90)||(29546896-29546940)
chr8 (56-92)||(30427744-30427780)
[»] chr1 (13 HSPs)
chr1 (46-109)||(29506830-29506893)
chr1 (46-104)||(27785968-27786026)
chr1 (56-109)||(32560986-32561039)
chr1 (46-90)||(16580813-16580857)
chr1 (64-104)||(50157802-50157842)
chr1 (58-109)||(7454573-7454624)
chr1 (46-109)||(23405353-23405416)
chr1 (46-100)||(38112837-38112891)
chr1 (56-109)||(8269363-8269416)
chr1 (46-91)||(25532976-25533021)
chr1 (56-89)||(44718073-44718106)
chr1 (56-92)||(45140018-45140054)
chr1 (46-94)||(49875609-49875657)
[»] chr5 (11 HSPs)
chr5 (46-108)||(20721053-20721115)
chr5 (56-101)||(16036840-16036885)
chr5 (46-109)||(13864347-13864410)
chr5 (46-108)||(10531543-10531605)
chr5 (56-109)||(16701576-16701629)
chr5 (56-105)||(20927652-20927701)
chr5 (56-109)||(40837898-40837951)
chr5 (46-91)||(41650952-41650997)
chr5 (46-91)||(42515810-42515855)
chr5 (54-90)||(12190003-12190039)
chr5 (46-90)||(33645703-33645747)
[»] chr3 (16 HSPs)
chr3 (48-89)||(1744005-1744046)
chr3 (56-109)||(16980349-16980402)
chr3 (56-101)||(18870728-18870773)
chr3 (46-90)||(8139718-8139762)
chr3 (46-104)||(19468454-19468512)
chr3 (54-91)||(31750433-31750470)
chr3 (46-91)||(38130972-38131017)
chr3 (46-90)||(2153515-2153559)
chr3 (46-98)||(7961738-7961790)
chr3 (57-109)||(8136627-8136679)
chr3 (58-90)||(17476761-17476793)
chr3 (61-109)||(25727962-25728010)
chr3 (46-90)||(30912830-30912874)
chr3 (56-92)||(43345019-43345055)
chr3 (46-106)||(51882198-51882258)
chr3 (48-104)||(54018406-54018462)
[»] chr2 (11 HSPs)
chr2 (56-109)||(660817-660870)
chr2 (58-101)||(961118-961161)
chr2 (56-106)||(22523010-22523060)
chr2 (56-89)||(231608-231641)
chr2 (56-109)||(29734704-29734757)
chr2 (46-91)||(34977207-34977252)
chr2 (46-90)||(2256974-2257018)
chr2 (46-90)||(12599879-12599923)
chr2 (45-109)||(25395437-25395501)
chr2 (56-92)||(25598574-25598610)
chr2 (46-90)||(36615047-36615091)
[»] chr4 (9 HSPs)
chr4 (46-90)||(11269697-11269741)
chr4 (46-90)||(44221450-44221494)
chr4 (46-109)||(36490571-36490634)
chr4 (56-109)||(11949758-11949811)
chr4 (56-101)||(16304101-16304146)
chr4 (46-91)||(24885813-24885858)
chr4 (56-109)||(49021779-49021832)
chr4 (46-90)||(38374960-38375004)
chr4 (46-90)||(43034356-43034400)
[»] chr7 (8 HSPs)
chr7 (46-109)||(3584207-3584270)
chr7 (46-109)||(21554929-21554992)
chr7 (56-109)||(19599158-19599211)
chr7 (54-91)||(41527571-41527608)
chr7 (46-90)||(5041342-5041386)
chr7 (58-90)||(21286365-21286397)
chr7 (46-90)||(21928132-21928176)
chr7 (65-109)||(30622994-30623038)
[»] scaffold0118 (1 HSPs)
scaffold0118 (46-91)||(45415-45460)
[»] scaffold0071 (1 HSPs)
scaffold0071 (48-109)||(53430-53491)
[»] scaffold0040 (1 HSPs)
scaffold0040 (56-92)||(56797-56833)


Alignment Details
Target: chr6 (Bit Score: 101; Significance: 4e-50; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 176 - 288
Target Start/End: Original strand, 3242626 - 3242738
Alignment:
Q  176 acataagtttcttaaagttctacggatgtcatcttaattgactcaaactaaaccaacttgttgatcgattgagtttgctctaaatttcatgagaaaagat 275  Q
    ||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3242626 acataagtttcttaaagttctaccgatgtcatcttgattgagtcaaactaaaccaacttgttgatcgattgagtttgctctaaatttcatgagaaaagat 3242725  T
Q  276 cgtaaaattctat 288  Q
    |||||||||||||    
T  3242726 cgtaaaattctat 3242738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 46 - 109
Target Start/End: Original strand, 3242499 - 3242562
Alignment:
Q  46 agcttaatttagttggtatggacaatagataatatatgcaaggtccatgattcaaatcccgacc 109  Q
    ||||||| |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  3242499 agcttaacttagttggtatgcacaatggataatatatgcaaggtccatgattcaaatcccgacc 3242562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 49
Target Start/End: Original strand, 3242444 - 3242486
Alignment:
Q  7 gcattgatgtatctttttaatcatataatttttcgttgtagct 49  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  3242444 gcattgatgtatctttttaatcatataatttttcattgtagct 3242486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 46 - 89
Target Start/End: Complemental strand, 6160726 - 6160683
Alignment:
Q  46 agcttaatttagttggtatggacaatagataatatatgcaaggt 89  Q
    ||||||| ||||||||||||||||||  ||||||||||||||||    
T  6160726 agcttaacttagttggtatggacaatgtataatatatgcaaggt 6160683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 89
Target Start/End: Original strand, 21598962 - 21599003
Alignment:
Q  48 cttaatttagttggtatggacaatagataatatatgcaaggt 89  Q
    ||||| |||||||||||| |||||| ||||||||||||||||    
T  21598962 cttaacttagttggtatgaacaatacataatatatgcaaggt 21599003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 91
Target Start/End: Original strand, 26400879 - 26400912
Alignment:
Q  58 ttggtatggacaatagataatatatgcaaggtcc 91  Q
    ||||||||||||||| ||||||||||||||||||    
T  26400879 ttggtatggacaatacataatatatgcaaggtcc 26400912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 91
Target Start/End: Original strand, 11982567 - 11982599
Alignment:
Q  59 tggtatggacaatagataatatatgcaaggtcc 91  Q
    |||||||||||||| ||||||||||||||||||    
T  11982567 tggtatggacaatacataatatatgcaaggtcc 11982599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 106
Target Start/End: Original strand, 12184511 - 12184571
Alignment:
Q  46 agcttaatttagttggtatggacaatagataatatatgcaaggtccatgattcaaatcccg 106  Q
    ||||||||| ||||||| || | |||  |||||||||||||||||| || |||||||||||    
T  12184511 agcttaattcagttggtttgaataatgcataatatatgcaaggtccgtggttcaaatcccg 12184571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 90
Target Start/End: Original strand, 12602036 - 12602072
Alignment:
Q  54 ttagttggtatggacaatagataatatatgcaaggtc 90  Q
    |||||||||| |||||||| |||||||||||||||||    
T  12602036 ttagttggtagggacaatacataatatatgcaaggtc 12602072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 49 - 109
Target Start/End: Complemental strand, 12800955 - 12800895
Alignment:
Q  49 ttaatttagttggtatggacaatagataatatatgcaaggtccatgattcaaatcccgacc 109  Q
    |||||| ||||||||||||||||| ||||||||||||||||||  | |||||| |||||||    
T  12800955 ttaattcagttggtatggacaatacataatatatgcaaggtccggggttcaaaccccgacc 12800895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 56 - 98
Target Start/End: Original strand, 31888039 - 31888081
Alignment:
Q  56 agttggtatggacaatagataatatatgcaaggtccatgattc 98  Q
    |||||||| ||||||| ||||||||||||||||||||||||||    
T  31888039 agttggtaaggacaatggataatatatgcaaggtccatgattc 31888081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 91
Target Start/End: Original strand, 32421572 - 32421617
Alignment:
Q  46 agcttaatttagttggtatggacaatagataatatatgcaaggtcc 91  Q
    ||||||| | ||||||||||||||||| ||||||||||||||||||    
T  32421572 agcttaactcagttggtatggacaatatataatatatgcaaggtcc 32421617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 46 - 89
Target Start/End: Original strand, 10982729 - 10982772
Alignment:
Q  46 agcttaatttagttggtatggacaatagataatatatgcaaggt 89  Q
    ||||||| | ||||||||||||||||| ||||||||||||||||    
T  10982729 agcttaactcagttggtatggacaatatataatatatgcaaggt 10982772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 87
Target Start/End: Original strand, 15020763 - 15020805
Alignment:
Q  45 tagcttaatttagttggtatggacaatagataatatatgcaag 87  Q
    |||||||||| ||||||||||||||||  ||||||||||||||    
T  15020763 tagcttaattcagttggtatggacaatgtataatatatgcaag 15020805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 87
Target Start/End: Original strand, 10601766 - 10601807
Alignment:
Q  46 agcttaatttagttggtatggacaatagataatatatgcaag 87  Q
    ||||||||| ||||||||||||||||  ||||||||||||||    
T  10601766 agcttaattcagttggtatggacaatgcataatatatgcaag 10601807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 91
Target Start/End: Complemental strand, 10871952 - 10871907
Alignment:
Q  46 agcttaatttagttggtatggacaatagataatatatgcaaggtcc 91  Q
    |||||| |||||||||||||||||||  ||||| ||||||||||||    
T  10871952 agcttagtttagttggtatggacaatgcataatgtatgcaaggtcc 10871907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 91
Target Start/End: Original strand, 17898082 - 17898127
Alignment:
Q  46 agcttaatttagttggtatggacaatagataatatatgcaaggtcc 91  Q
    ||||||| | ||||||||||||||| | ||||||||||||||||||    
T  17898082 agcttaactcagttggtatggacaaaacataatatatgcaaggtcc 17898127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 89
Target Start/End: Original strand, 37141362 - 37141403
Alignment:
Q  48 cttaatttagttggtatggacaatagataatatatgcaaggt 89  Q
    ||||||| ||||||||||||||||  ||||||||||||||||    
T  37141362 cttaattcagttggtatggacaatgcataatatatgcaaggt 37141403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 91
Target Start/End: Original strand, 40482342 - 40482387
Alignment:
Q  46 agcttaatttagttggtatggacaatagataatatatgcaaggtcc 91  Q
    ||||||||||||||||||| || |||| ||||| ||||||||||||    
T  40482342 agcttaatttagttggtatagataatatataatgtatgcaaggtcc 40482387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 91
Target Start/End: Original strand, 40795380 - 40795425
Alignment:
Q  46 agcttaatttagttggtatggacaatagataatatatgcaaggtcc 91  Q
    ||||||| | |||||||||| |||||| ||||||||||||||||||    
T  40795380 agcttaactcagttggtatgaacaatacataatatatgcaaggtcc 40795425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 90
Target Start/End: Original strand, 29546896 - 29546940
Alignment:
Q  46 agcttaatttagttggtatggacaatagataatatatgcaaggtc 90  Q
    ||||||| | ||||| || ||||||||||||||||||||||||||    
T  29546896 agcttaactcagttgatagggacaatagataatatatgcaaggtc 29546940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 92
Target Start/End: Original strand, 30427744 - 30427780
Alignment:
Q  56 agttggtatggacaatagataatatatgcaaggtcca 92  Q
    ||||||||||||||||  |||||||||||||||||||    
T  30427744 agttggtatggacaatgcataatatatgcaaggtcca 30427780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 46 - 109
Target Start/End: Original strand, 29506830 - 29506893
Alignment:
Q  46 agcttaatttagttggtatggacaatagataatatatgcaaggtccatgattcaaatcccgacc 109  Q
    ||||||| ||||||||||| ||||||| ||||||||||||||||||| | ||| || |||||||    
T  29506830 agcttaacttagttggtatagacaatacataatatatgcaaggtccagggttcgaaccccgacc 29506893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 104
Target Start/End: Complemental strand, 27786026 - 27785968
Alignment:
Q  46 agcttaatttagttggtatggacaatagataatatatgcaaggtccatgattcaaatcc 104  Q
    ||||||| | ||||||| || |||||| ||||||||||||||||||| |||||||||||    
T  27786026 agcttaactcagttggtttgaacaatacataatatatgcaaggtccaggattcaaatcc 27785968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 56 - 109
Target Start/End: Original strand, 32560986 - 32561039
Alignment:
Q  56 agttggtatggacaatagataatatatgcaaggtccatgattcaaatcccgacc 109  Q
    ||||||||||||||||  ||||||||||||||||||  | ||||||||||||||    
T  32560986 agttggtatggacaatgtataatatatgcaaggtccggggttcaaatcccgacc 32561039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 90
Target Start/End: Complemental strand, 16580857 - 16580813
Alignment:
Q  46 agcttaatttagttggtatggacaatagataatatatgcaaggtc 90  Q
    ||||||||| ||||||||||||||||  |||||||||||||||||    
T  16580857 agcttaattcagttggtatggacaatgtataatatatgcaaggtc 16580813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 104
Target Start/End: Complemental strand, 50157842 - 50157802
Alignment:
Q  64 tggacaatagataatatatgcaaggtccatgattcaaatcc 104  Q
    ||||||||  |||||||||||||||||||||||||||||||    
T  50157842 tggacaatctataatatatgcaaggtccatgattcaaatcc 50157802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 58 - 109
Target Start/End: Complemental strand, 7454624 - 7454573
Alignment:
Q  58 ttggtatggacaatagataatatatgcaaggtccatgattcaaatcccgacc 109  Q
    ||||||| ||||||  |||||||||||||||| ||||||||||| |||||||    
T  7454624 ttggtatcgacaatgtataatatatgcaaggttcatgattcaaaccccgacc 7454573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 46 - 109
Target Start/End: Complemental strand, 23405416 - 23405353
Alignment:
Q  46 agcttaatttagttggtatggacaatagataatatatgcaaggtccatgattcaaatcccgacc 109  Q
    ||||||| ||||||| || |||||||  ||||||||||||||||||| | ||| ||||||||||    
T  23405416 agcttaacttagttgttaaggacaatgcataatatatgcaaggtccagggttcgaatcccgacc 23405353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 100
Target Start/End: Original strand, 38112837 - 38112891
Alignment:
Q  46 agcttaatttagttggtatggacaatagataatatatgcaaggtccatgattcaa 100  Q
    ||||||| |||||| ||||  ||||||||||||||||||||||| |||| |||||    
T  38112837 agcttaacttagttagtataaacaatagataatatatgcaaggttcatggttcaa 38112891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 109
Target Start/End: Complemental strand, 8269416 - 8269363
Alignment:
Q  56 agttggtatggacaatagataatatatgcaaggtccatgattcaaatcccgacc 109  Q
    |||||||| |||||||| ||||||||||||||||||  | |||||| |||||||    
T  8269416 agttggtaaggacaatacataatatatgcaaggtccggggttcaaaccccgacc 8269363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 91
Target Start/End: Original strand, 25532976 - 25533021
Alignment:
Q  46 agcttaatttagttggtatggacaatagataatatatgcaaggtcc 91  Q
    |||||| || ||||||||||||||||  ||||||||||||||||||    
T  25532976 agcttagttcagttggtatggacaatgcataatatatgcaaggtcc 25533021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 89
Target Start/End: Complemental strand, 44718106 - 44718073
Alignment:
Q  56 agttggtatggacaatagataatatatgcaaggt 89  Q
    |||||||||||||||||||||| |||||||||||    
T  44718106 agttggtatggacaatagataaaatatgcaaggt 44718073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 92
Target Start/End: Complemental strand, 45140054 - 45140018
Alignment:
Q  56 agttggtatggacaatagataatatatgcaaggtcca 92  Q
    ||||||||||||||||  |||||||||||||||||||    
T  45140054 agttggtatggacaatgcataatatatgcaaggtcca 45140018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 94
Target Start/End: Complemental strand, 49875657 - 49875609
Alignment:
Q  46 agcttaatttagttggtatggacaatagataatatatgcaaggtccatg 94  Q
    ||||||| | |||||||| |||||||  |||||||||||||||||||||    
T  49875657 agcttaactcagttggtaaggacaatgcataatatatgcaaggtccatg 49875609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 108
Target Start/End: Original strand, 20721053 - 20721115
Alignment:
Q  46 agcttaatttagttggtatggacaatagataatatatgcaaggtccatgattcaaatcccgac 108  Q
    ||||||| | ||||||||||||||||| ||||||||||||||||||  | |||||| ||||||    
T  20721053 agcttaactcagttggtatggacaatacataatatatgcaaggtccggggttcaaaccccgac 20721115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 56 - 101
Target Start/End: Original strand, 16036840 - 16036885
Alignment:
Q  56 agttggtatggacaatagataatatatgcaaggtccatgattcaaa 101  Q
    |||||| |||||||||| ||||||||||||||||||||| ||||||    
T  16036840 agttggcatggacaatacataatatatgcaaggtccatggttcaaa 16036885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 46 - 109
Target Start/End: Original strand, 13864347 - 13864410
Alignment:
Q  46 agcttaatttagttggtatggacaatagataatatatgcaaggtccatgattcaaatcccgacc 109  Q
    ||||||| | |||||||||| |||||| ||||||||||||||||||  | |||||| |||||||    
T  13864347 agcttaactcagttggtatgaacaatacataatatatgcaaggtccggggttcaaaccccgacc 13864410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 108
Target Start/End: Original strand, 10531543 - 10531605
Alignment:
Q  46 agcttaatttagttggtatggacaatagataatatatgcaaggtccatgattcaaatcccgac 108  Q
    |||||| |||||||| ||||||||||  |||||||||||| ||||| || |||||| ||||||    
T  10531543 agcttagtttagttgctatggacaatgcataatatatgcacggtccgtggttcaaaccccgac 10531605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 109
Target Start/End: Complemental strand, 16701629 - 16701576
Alignment:
Q  56 agttggtatggacaatagataatatatgcaaggtccatgattcaaatcccgacc 109  Q
    |||||||| |||||||  ||||||||||||||||||  |||||||| |||||||    
T  16701629 agttggtagggacaatgaataatatatgcaaggtccgggattcaaaccccgacc 16701576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 105
Target Start/End: Original strand, 20927652 - 20927701
Alignment:
Q  56 agttggtatggacaatagataatatatgcaaggtccatgattcaaatccc 105  Q
    ||||||||||||||||| |||||||||||||| |||  | ||||||||||    
T  20927652 agttggtatggacaatacataatatatgcaagatccgaggttcaaatccc 20927701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 109
Target Start/End: Complemental strand, 40837951 - 40837898
Alignment:
Q  56 agttggtatggacaatagataatatatgcaaggtccatgattcaaatcccgacc 109  Q
    ||||||||||||||||| |||| |||||||||||||  | |||||| |||||||    
T  40837951 agttggtatggacaatatataaaatatgcaaggtccggggttcaaaccccgacc 40837898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 91
Target Start/End: Complemental strand, 41650997 - 41650952
Alignment:
Q  46 agcttaatttagttggtatggacaatagataatatatgcaaggtcc 91  Q
    ||||||| | ||||||||||||||||  ||||||||||||||||||    
T  41650997 agcttaactcagttggtatggacaatgcataatatatgcaaggtcc 41650952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 91
Target Start/End: Original strand, 42515810 - 42515855
Alignment:
Q  46 agcttaatttagttggtatggacaatagataatatatgcaaggtcc 91  Q
    ||||||||| ||||||||||||||||  |||||||||| |||||||    
T  42515810 agcttaattcagttggtatggacaatgcataatatatgtaaggtcc 42515855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 90
Target Start/End: Original strand, 12190003 - 12190039
Alignment:
Q  54 ttagttggtatggacaatagataatatatgcaaggtc 90  Q
    ||||||||||||||||||| |||||||||| ||||||    
T  12190003 ttagttggtatggacaatacataatatatgtaaggtc 12190039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 90
Target Start/End: Complemental strand, 33645747 - 33645703
Alignment:
Q  46 agcttaatttagttggtatggacaatagataatatatgcaaggtc 90  Q
    ||||||| | ||||||||||||||||  |||||||||||||||||    
T  33645747 agcttaactcagttggtatggacaatgtataatatatgcaaggtc 33645703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 48 - 89
Target Start/End: Complemental strand, 1744046 - 1744005
Alignment:
Q  48 cttaatttagttggtatggacaatagataatatatgcaaggt 89  Q
    ||||||| ||||||||||||||||| ||||||||||||||||    
T  1744046 cttaattcagttggtatggacaatacataatatatgcaaggt 1744005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 56 - 109
Target Start/End: Complemental strand, 16980402 - 16980349
Alignment:
Q  56 agttggtatggacaatagataatatatgcaaggtccatgattcaaatcccgacc 109  Q
    |||||||| |||||||  |||||||||||||||| |||| ||||||||||||||    
T  16980402 agttggtaaggacaatgcataatatatgcaaggttcatggttcaaatcccgacc 16980349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 56 - 101
Target Start/End: Complemental strand, 18870773 - 18870728
Alignment:
Q  56 agttggtatggacaatagataatatatgcaaggtccatgattcaaa 101  Q
    |||||||| |||||||  ||||||||||||||||||||||||||||    
T  18870773 agttggtagggacaatgcataatatatgcaaggtccatgattcaaa 18870728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 90
Target Start/End: Original strand, 8139718 - 8139762
Alignment:
Q  46 agcttaatttagttggtatggacaatagataatatatgcaaggtc 90  Q
    |||||| |||||||||||||||||||  |||||||||||||||||    
T  8139718 agcttagtttagttggtatggacaatgcataatatatgcaaggtc 8139762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 104
Target Start/End: Original strand, 19468454 - 19468512
Alignment:
Q  46 agcttaatttagttggtatggacaatagataatatatgcaaggtccatgattcaaatcc 104  Q
    ||||||| | ||||||||||||||||  |||||||||||||||||| || ||| |||||    
T  19468454 agcttaactcagttggtatggacaatgcataatatatgcaaggtccgtggttcgaatcc 19468512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 91
Target Start/End: Original strand, 31750433 - 31750470
Alignment:
Q  54 ttagttggtatggacaatagataatatatgcaaggtcc 91  Q
    |||||||||| |||||||| ||||||||||||||||||    
T  31750433 ttagttggtagggacaatacataatatatgcaaggtcc 31750470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 91
Target Start/End: Complemental strand, 38131017 - 38130972
Alignment:
Q  46 agcttaatttagttggtatggacaatagataatatatgcaaggtcc 91  Q
    ||||||| | ||||||||||||||||  ||||||||||||||||||    
T  38131017 agcttaactcagttggtatggacaatgcataatatatgcaaggtcc 38130972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 90
Target Start/End: Complemental strand, 2153559 - 2153515
Alignment:
Q  46 agcttaatttagttggtatggacaatagataatatatgcaaggtc 90  Q
    ||||||||| ||||||| ||||||||  |||||||||||||||||    
T  2153559 agcttaattcagttggtttggacaatgcataatatatgcaaggtc 2153515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 98
Target Start/End: Complemental strand, 7961790 - 7961738
Alignment:
Q  46 agcttaatttagttggtatggacaatagataatatatgcaaggtccatgattc 98  Q
    ||||||||| |||||||| |||||||  |||||||||||| |||||| |||||    
T  7961790 agcttaattcagttggtaaggacaatgtataatatatgcagggtccaggattc 7961738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 109
Target Start/End: Complemental strand, 8136679 - 8136627
Alignment:
Q  57 gttggtatggacaatagataatatatgcaaggtccatgattcaaatcccgacc 109  Q
    |||||||||||| ||  ||||||||||||||||||| | |||||| |||||||    
T  8136679 gttggtatggacgatgcataatatatgcaaggtccaaggttcaaaccccgacc 8136627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 90
Target Start/End: Complemental strand, 17476793 - 17476761
Alignment:
Q  58 ttggtatggacaatagataatatatgcaaggtc 90  Q
    ||||||||||||||| |||||||||||||||||    
T  17476793 ttggtatggacaatatataatatatgcaaggtc 17476761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 109
Target Start/End: Complemental strand, 25728010 - 25727962
Alignment:
Q  61 gtatggacaatagataatatatgcaaggtccatgattcaaatcccgacc 109  Q
    |||||||||||  ||||||||||||||||||  | ||||||||||||||    
T  25728010 gtatggacaatgcataatatatgcaaggtccggggttcaaatcccgacc 25727962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 90
Target Start/End: Complemental strand, 30912874 - 30912830
Alignment:
Q  46 agcttaatttagttggtatggacaatagataatatatgcaaggtc 90  Q
    ||||||| ||||||||||||||||||  |||| ||||||||||||    
T  30912874 agcttaacttagttggtatggacaattcataaaatatgcaaggtc 30912830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 92
Target Start/End: Complemental strand, 43345055 - 43345019
Alignment:
Q  56 agttggtatggacaatagataatatatgcaaggtcca 92  Q
    |||||||||| |||||| |||||||||||||||||||    
T  43345055 agttggtatgaacaatacataatatatgcaaggtcca 43345019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 106
Target Start/End: Complemental strand, 51882258 - 51882198
Alignment:
Q  46 agcttaatttagttggtatggacaatagataatatatgcaaggtccatgattcaaatcccg 106  Q
    ||||||| | ||||||||||||||||  |||||||||||||| |||| | |||||| ||||    
T  51882258 agcttaactcagttggtatggacaatgcataatatatgcaagatccagggttcaaaccccg 51882198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 48 - 104
Target Start/End: Complemental strand, 54018462 - 54018406
Alignment:
Q  48 cttaatttagttggtatggacaatagataatatatgcaaggtccatgattcaaatcc 104  Q
    ||||| ||||||||||||||||||  |||| ||||||||||| || | |||||||||    
T  54018462 cttaacttagttggtatggacaatgcataaaatatgcaaggttcagggttcaaatcc 54018406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 56 - 109
Target Start/End: Complemental strand, 660870 - 660817
Alignment:
Q  56 agttggtatggacaatagataatatatgcaaggtccatgattcaaatcccgacc 109  Q
    ||||||||||||||||  ||||||||||||||||||| | |||||| |||||||    
T  660870 agttggtatggacaatgcataatatatgcaaggtccagggttcaaaccccgacc 660817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 58 - 101
Target Start/End: Original strand, 961118 - 961161
Alignment:
Q  58 ttggtatggacaatagataatatatgcaaggtccatgattcaaa 101  Q
    |||||| |||||||  ||||||||||||||||||||||||||||    
T  961118 ttggtagggacaatgcataatatatgcaaggtccatgattcaaa 961161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 106
Target Start/End: Complemental strand, 22523060 - 22523010
Alignment:
Q  56 agttggtatggacaatagataatatatgcaaggtccatgattcaaatcccg 106  Q
    ||||||||||||||||| |||||||||||||||| |  | |||||||||||    
T  22523060 agttggtatggacaatacataatatatgcaaggttcgaggttcaaatcccg 22523010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 89
Target Start/End: Complemental strand, 231641 - 231608
Alignment:
Q  56 agttggtatggacaatagataatatatgcaaggt 89  Q
    ||||||||||||||||| ||||||||||||||||    
T  231641 agttggtatggacaatacataatatatgcaaggt 231608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 109
Target Start/End: Original strand, 29734704 - 29734757
Alignment:
Q  56 agttggtatggacaatagataatatatgcaaggtccatgattcaaatcccgacc 109  Q
    ||||| ||||||||||  |||||||||||||||||| || |||||| |||||||    
T  29734704 agttgatatggacaatgcataatatatgcaaggtccgtggttcaaaccccgacc 29734757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 91
Target Start/End: Original strand, 34977207 - 34977252
Alignment:
Q  46 agcttaatttagttggtatggacaatagataatatatgcaaggtcc 91  Q
    ||||||| | ||||||||||||||||  ||||||||||||||||||    
T  34977207 agcttaactcagttggtatggacaatgcataatatatgcaaggtcc 34977252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 90
Target Start/End: Original strand, 2256974 - 2257018
Alignment:
Q  46 agcttaatttagttggtatggacaatagataatatatgcaaggtc 90  Q
    ||||||| | ||||||||||||||||  |||||||||||||||||    
T  2256974 agcttaactcagttggtatggacaatgcataatatatgcaaggtc 2257018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 90
Target Start/End: Complemental strand, 12599923 - 12599879
Alignment:
Q  46 agcttaatttagttggtatggacaatagataatatatgcaaggtc 90  Q
    ||||||| | |||| |||||||||||| |||||||||||||||||    
T  12599923 agcttaactcagttagtatggacaatacataatatatgcaaggtc 12599879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 109
Target Start/End: Complemental strand, 25395501 - 25395437
Alignment:
Q  45 tagcttaatttagttggtatggacaatagataatatatgcaaggtccatgattcaaatcccgacc 109  Q
    |||||||| | |||||||| | |||||  |||||||||||||||| || | ||||||||||||||    
T  25395501 tagcttaactcagttggtaggaacaatgcataatatatgcaaggttcaaggttcaaatcccgacc 25395437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 92
Target Start/End: Complemental strand, 25598610 - 25598574
Alignment:
Q  56 agttggtatggacaatagataatatatgcaaggtcca 92  Q
    ||||||||||||||||  |||||||||||||||||||    
T  25598610 agttggtatggacaatgcataatatatgcaaggtcca 25598574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 90
Target Start/End: Complemental strand, 36615091 - 36615047
Alignment:
Q  46 agcttaatttagttggtatggacaatagataatatatgcaaggtc 90  Q
    ||||||| | |||||||||||||||| |||| |||||||||||||    
T  36615091 agcttaactcagttggtatggacaatggatagtatatgcaaggtc 36615047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 90
Target Start/End: Original strand, 11269697 - 11269741
Alignment:
Q  46 agcttaatttagttggtatggacaatagataatatatgcaaggtc 90  Q
    ||||||| |||||||||| |||||||| |||||||||||||||||    
T  11269697 agcttaacttagttggtaaggacaatacataatatatgcaaggtc 11269741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 90
Target Start/End: Original strand, 44221450 - 44221494
Alignment:
Q  46 agcttaatttagttggtatggacaatagataatatatgcaaggtc 90  Q
    ||||||||| ||||||||||||||||  |||||||||||||||||    
T  44221450 agcttaattcagttggtatggacaatgcataatatatgcaaggtc 44221494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 46 - 109
Target Start/End: Original strand, 36490571 - 36490634
Alignment:
Q  46 agcttaatttagttggtatggacaatagataatatatgcaaggtccatgattcaaatcccgacc 109  Q
    ||||||| ||||||||||||||||||  ||||| |||||||| |||  | ||||||||||||||    
T  36490571 agcttaacttagttggtatggacaatgcataatgtatgcaagatccggggttcaaatcccgacc 36490634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 109
Target Start/End: Complemental strand, 11949811 - 11949758
Alignment:
Q  56 agttggtatggacaatagataatatatgcaaggtccatgattcaaatcccgacc 109  Q
    ||||||||||||||||  ||||||||||||||||||  | |||||| |||||||    
T  11949811 agttggtatggacaatgcataatatatgcaaggtccggggttcaaaccccgacc 11949758  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 101
Target Start/End: Complemental strand, 16304146 - 16304101
Alignment:
Q  56 agttggtatggacaatagataatatatgcaaggtccatgattcaaa 101  Q
    ||||||||||||||||  ||||||||||||||||||  ||||||||    
T  16304146 agttggtatggacaatgcataatatatgcaaggtccgggattcaaa 16304101  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 91
Target Start/End: Complemental strand, 24885858 - 24885813
Alignment:
Q  46 agcttaatttagttggtatggacaatagataatatatgcaaggtcc 91  Q
    ||||||| | ||||||||||||||||| |||| |||||||||||||    
T  24885858 agcttaactcagttggtatggacaatacataaaatatgcaaggtcc 24885813  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 109
Target Start/End: Original strand, 49021779 - 49021832
Alignment:
Q  56 agttggtatggacaatagataatatatgcaaggtccatgattcaaatcccgacc 109  Q
    ||||||||||||||||| |||| |||||||||||| | ||||| || |||||||    
T  49021779 agttggtatggacaatacataaaatatgcaaggtctaggattcgaaccccgacc 49021832  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 90
Target Start/End: Original strand, 38374960 - 38375004
Alignment:
Q  46 agcttaatttagttggtatggacaatagataatatatgcaaggtc 90  Q
    ||||||| |||||||||| |||||||  |||||||||||||||||    
T  38374960 agcttaacttagttggtagggacaatgcataatatatgcaaggtc 38375004  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 90
Target Start/End: Complemental strand, 43034400 - 43034356
Alignment:
Q  46 agcttaatttagttggtatggacaatagataatatatgcaaggtc 90  Q
    ||||||| | ||||||||||||||||  |||||||||||||||||    
T  43034400 agcttaactcagttggtatggacaatgcataatatatgcaaggtc 43034356  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 46 - 109
Target Start/End: Original strand, 3584207 - 3584270
Alignment:
Q  46 agcttaatttagttggtatggacaatagataatatatgcaaggtccatgattcaaatcccgacc 109  Q
    ||||||| |||||||||| |||||||  |||||||||||||||| |  |||||||| |||||||    
T  3584207 agcttaacttagttggtaaggacaatgcataatatatgcaaggtacgagattcaaaccccgacc 3584270  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 46 - 109
Target Start/End: Complemental strand, 21554992 - 21554929
Alignment:
Q  46 agcttaatttagttggtatggacaatagataatatatgcaaggtccatgattcaaatcccgacc 109  Q
    ||||||| |||||||||| ||| |||   |||||||||||||||||| |||||||| |||||||    
T  21554992 agcttaacttagttggtagggataatgcttaatatatgcaaggtccaggattcaaaccccgacc 21554929  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 109
Target Start/End: Original strand, 19599158 - 19599211
Alignment:
Q  56 agttggtatggacaatagataatatatgcaaggtccatgattcaaatcccgacc 109  Q
    ||||||||||||||||  ||||||||||||||||||  | |||||| |||||||    
T  19599158 agttggtatggacaatgcataatatatgcaaggtccggggttcaaaccccgacc 19599211  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 91
Target Start/End: Original strand, 41527571 - 41527608
Alignment:
Q  54 ttagttggtatggacaatagataatatatgcaaggtcc 91  Q
    ||||||||||||||||||  ||||||||||||||||||    
T  41527571 ttagttggtatggacaatgcataatatatgcaaggtcc 41527608  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 90
Target Start/End: Original strand, 5041342 - 5041386
Alignment:
Q  46 agcttaatttagttggtatggacaatagataatatatgcaaggtc 90  Q
    ||||||| | ||||||||||||||||  |||||||||||||||||    
T  5041342 agcttaactgagttggtatggacaatgcataatatatgcaaggtc 5041386  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 90
Target Start/End: Original strand, 21286365 - 21286397
Alignment:
Q  58 ttggtatggacaatagataatatatgcaaggtc 90  Q
    ||||||||||||||| |||||||||||||||||    
T  21286365 ttggtatggacaatacataatatatgcaaggtc 21286397  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 90
Target Start/End: Complemental strand, 21928176 - 21928132
Alignment:
Q  46 agcttaatttagttggtatggacaatagataatatatgcaaggtc 90  Q
    ||||||| ||||||||||||||||||  ||||| |||||||||||    
T  21928176 agcttaacttagttggtatggacaatgcataatttatgcaaggtc 21928132  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 109
Target Start/End: Original strand, 30622994 - 30623038
Alignment:
Q  65 ggacaatagataatatatgcaaggtccatgattcaaatcccgacc 109  Q
    |||||||| ||||||||||||||||| ||| |||||| |||||||    
T  30622994 ggacaatacataatatatgcaaggtctatggttcaaaccccgacc 30623038  T

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Target: scaffold0118 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 91
Target Start/End: Original strand, 45415 - 45460
Alignment:
Q  46 agcttaatttagttggtatggacaatagataatatatgcaaggtcc 91  Q
    ||||||| | ||||||| ||||||||| ||||||||||||||||||    
T  45415 agcttaactcagttggtttggacaatacataatatatgcaaggtcc 45460  T

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Target: scaffold0071 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 109
Target Start/End: Original strand, 53430 - 53491
Alignment:
Q  48 cttaatttagttggtatggacaatagataatatatgcaaggtccatgattcaaatcccgacc 109  Q
    ||||||| |||| ||| |||||||| |||| |||||||||||||  |||||||| |||||||    
T  53430 cttaattcagttagtagggacaatatataacatatgcaaggtccgggattcaaaccccgacc 53491  T

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Target: scaffold0040 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 92
Target Start/End: Original strand, 56797 - 56833
Alignment:
Q  56 agttggtatggacaatagataatatatgcaaggtcca 92  Q
    ||||||||||||||||  |||||||||||||||||||    
T  56797 agttggtatggacaatgtataatatatgcaaggtcca 56833  T

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