View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11171A_low_91 (Length: 302)
Name: NF11171A_low_91
Description: NF11171A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11171A_low_91 |
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Alignment Details
Target: chr1 (Bit Score: 143; Significance: 4e-75; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 6 - 199
Target Start/End: Original strand, 23188091 - 23188283
Alignment:
| Q |
6 |
atctaccttcttgtgcagctcaagagaaaattggtaggtagctagttttaagnnnnnnnttatcggtttagataagaaggtataataattaaaacacttg |
105 |
Q |
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| T |
23188091 |
atctaccttcttgtgcagctcaagagaaaattggtaggtagctagttttaagaaaaaaattatcggtttagataagaaggtataataattaaaacactta |
23188190 |
T |
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| Q |
106 |
caacactatatttccactaatagttgtatttctttttagctcttagtgctccttataatttcaatnnnnnnntaatgtaactatttattttttc |
199 |
Q |
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| T |
23188191 |
caacactatatttccactaatagttgtatttctttttagctcttagtgctccttataatttcaat-aaaaaataatgtaactatttattttttc |
23188283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 247 - 292
Target Start/End: Original strand, 23188303 - 23188351
Alignment:
| Q |
247 |
actatgagatattcatggagg---aataataataatttcatgtctttct |
292 |
Q |
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| T |
23188303 |
actatgagatattcatggaggaataataataataatttcatgtctttct |
23188351 |
T |
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