View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11171A_low_93 (Length: 301)
Name: NF11171A_low_93
Description: NF11171A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11171A_low_93 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 81; Significance: 4e-38; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 17 - 105
Target Start/End: Complemental strand, 28709579 - 28709491
Alignment:
| Q |
17 |
ttaaaagtaccactgcgcatgaaccatatgaaaaaagagaataccattttttatatataattgatgatgacaagaacatggcaattgaa |
105 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
28709579 |
ttaaaagtaccactgcgcatgaaccacatgaaaaaagagaataccattttttatatataattgatgattacaagaacatggcaattgaa |
28709491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 188 - 301
Target Start/End: Complemental strand, 28709491 - 28709375
Alignment:
| Q |
188 |
aagtgaatagaaagtgatgtaaaatggaaataacaaacaattttaccaaattctgaccctacttgacaat---nnnnnnnnntcagttagtgctgagaga |
284 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| ||||| ||| |||||||||| ||||||| |
|
|
| T |
28709491 |
aagtgaatagaaagtgatgtaacatggaaataacaaataattttaccaaattctgaccctgcttgaaaataaaaaataaaaatcagttagtgttgagaga |
28709392 |
T |
|
| Q |
285 |
tgcaaaagccacttctg |
301 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
28709391 |
tgcaaaagccacttctg |
28709375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 17 - 83
Target Start/End: Complemental strand, 28718274 - 28718208
Alignment:
| Q |
17 |
ttaaaagtaccactgcgcatgaaccatatgaaaaaagagaataccattttttatatataattgatga |
83 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||||| |
|
|
| T |
28718274 |
ttaaaagtaccactgcgcatgaaccatatgaaaaaagagaaaatcattttttatatatcattgatga |
28718208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 173 - 222
Target Start/End: Complemental strand, 28700551 - 28700502
Alignment:
| Q |
173 |
tcctactttctttacaagtgaatagaaagtgatgtaaaatggaaataaca |
222 |
Q |
| |
|
||||||||||||||||||| |||| |||||||| ||||||||||||||| |
|
|
| T |
28700551 |
tcctactttctttacaagtaaatacaaagtgatcgaaaatggaaataaca |
28700502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 172 - 222
Target Start/End: Original strand, 32371064 - 32371115
Alignment:
| Q |
172 |
atcctactttctttacaagtgaa-tagaaagtgatgtaaaatggaaataaca |
222 |
Q |
| |
|
|||||||||||||||||||| || |||||||||||| ||||||||||||||| |
|
|
| T |
32371064 |
atcctactttctttacaagtaaaatagaaagtgatggaaaatggaaataaca |
32371115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University