View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11171A_low_95 (Length: 294)
Name: NF11171A_low_95
Description: NF11171A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11171A_low_95 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 17 - 226
Target Start/End: Complemental strand, 13000634 - 13000425
Alignment:
| Q |
17 |
ggacatcaccaacattgcaaatttccatcatctatttgtctttcacattacatcattattgcacttcttatggtcgtttttacgattatttcctttgatt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || |
|
|
| T |
13000634 |
ggacatcaccaacattgcaaatttccatcatctatttgtctttcacattacatcattattgcacttcttatggtcgtttttacgataatttcctttgttt |
13000535 |
T |
|
| Q |
117 |
ctctttagttttctcattttccagatttcctcagcaacatcctagctacaattctttggttcgttctatttttattttgctgtacaatgttgttctcttt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13000534 |
ctctttagttttctcattttccagatttcctcagcagcatcctagctacaattctttggttcgttctatttttattttgctgtacaatgttgttctcttt |
13000435 |
T |
|
| Q |
217 |
acacttagtt |
226 |
Q |
| |
|
|||| ||||| |
|
|
| T |
13000434 |
acacgtagtt |
13000425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 17 - 219
Target Start/End: Complemental strand, 13075272 - 13075069
Alignment:
| Q |
17 |
ggacatcaccaacattgcaaatttccatcatctatttgtctttcacattacatcattattgcacttcttatggtcgtttttacgattatttcctttgatt |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
13075272 |
ggacatcaccaacattgcaaatttccatcatctatttgtctttcacattacatcattattgcacttcttatggtcgtttttacgattatttcctttgttt |
13075173 |
T |
|
| Q |
117 |
ctctttagttttctcattttccagatttcctcagcaacatcc-tagctacaattctttggttcgttctatttttattttgctgtacaatgttgttctctt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13075172 |
ctctttagttttctcattttccagatttcctcagcaacatccatagctacaattctttggttcgttctatttttattttgctgtacaatgttgttctctt |
13075073 |
T |
|
| Q |
216 |
taca |
219 |
Q |
| |
|
|||| |
|
|
| T |
13075072 |
taca |
13075069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University