View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11171_high_1 (Length: 617)
Name: NF11171_high_1
Description: NF11171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11171_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 243; Significance: 1e-134; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 1 - 323
Target Start/End: Original strand, 32870184 - 32870504
Alignment:
| Q |
1 |
tcccttcctctcaacatatcatttatgatatattaagctcatgaattatcaatagctgcttacaggtatctggatccagaatatgcttatactggacaac |
100 |
Q |
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| T |
32870184 |
tcccttcctctcaacatatcatttatgatatattaagctcatgaattatcaatagctgcttacaggtatctggatccagaatatgcttatactggacgac |
32870283 |
T |
|
| Q |
101 |
ttactgataaatcagatgtttactcttatggagtcgtgctccttgagttaataactggacgacgaccgattgataaagctaaccctcacaagcacgttag |
200 |
Q |
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| T |
32870284 |
ttactgataaatccgatgtttactcttatggagtcgtgctccttgagttaataactggacgagtagcgattgataaagctaaccctcacatggacgttaa |
32870383 |
T |
|
| Q |
201 |
tttggttgagtgggtaagtgctataccaccatatagagtttatatattactccctcattctcataataatcgactcannnnnnnaaaaaattgtcctacc |
300 |
Q |
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| T |
32870384 |
tttggttgagtgggtaagtgttataccacc--atagagtttatatattactccctccttctcataataaccgactcatttgtaaaaacaattgtcctacc |
32870481 |
T |
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| Q |
301 |
tcctaatatatatgctttatttc |
323 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
32870482 |
tcctaatatatatgctttatttc |
32870504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 160; E-Value: 6e-85
Query Start/End: Original strand, 317 - 596
Target Start/End: Original strand, 32870523 - 32870815
Alignment:
| Q |
317 |
ttatttcctcttttgaatgataccctagcataaccctaacttttaactacaaccatc----------acaggctaggccttttttcaagaggggtttaaa |
406 |
Q |
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| T |
32870523 |
ttatttcctcttttgaatgataccctagcataaccctaacttttaactacaaccatctttcatcatcacaggctaggccttttttcatgcgtgctttaaa |
32870622 |
T |
|
| Q |
407 |
agaaaataagcatctggttgattcaaggcttaaggt---atttgaccgtaatgagatgactcgtatgatagcatgcgctgaagcttgcacgcgtctgtca |
503 |
Q |
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| T |
32870623 |
aggaaaaaatgatctggttgatccaaggcttaagaagcaatttgaccgtaaagagatgactcatatggtagcatgcgctgcagcttgcacgcgtcagtca |
32870722 |
T |
|
| Q |
504 |
gcaaatgatcgaccaacgatgagcacggtaatgtgaagaatttgttttatcgtttaccctacctgtttattttcaactgacattcttcttttc |
596 |
Q |
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| T |
32870723 |
gcaaaggatcgaccaaagatgagccaggtaatgtgaagaatttgttttatcgtttaccctacctgtttattttcaactgtcattcttcttttc |
32870815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 28 - 249
Target Start/End: Original strand, 32903541 - 32903757
Alignment:
| Q |
28 |
atatattaagctcatgaattatcaatagctgcttacaggtatctggatccagaatatgcttatactggacaacttactgataaatcagatgtttactctt |
127 |
Q |
| |
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|||||| |||||||||| |||| || |||| ||||||||||||| ||||||||||||| || |||| ||||||| |||||||||||||||| ||||| |
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| T |
32903541 |
atatatcaagctcatgagctatctattgctgtctacaggtatctggctccagaatatgctgctagtggaaaacttaccgataaatcagatgttttctctt |
32903640 |
T |
|
| Q |
128 |
atggagtcgtgctccttgagttaataactggacgacgaccgattgataaagctaaccctcacaagcacgttagtttggttgagtgggtaagtgctatacc |
227 |
Q |
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| T |
32903641 |
atggagtcatgctccttgagttattaactggacgacgaccggttgataaagatcagacttacatggatgatagtttggttgagtgggtaagtgtt----- |
32903735 |
T |
|
| Q |
228 |
accatatagagtttatatatta |
249 |
Q |
| |
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|||||| ||||||||||||||| |
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| T |
32903736 |
accatagagagtttatatatta |
32903757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 444 - 561
Target Start/End: Original strand, 32903929 - 32904046
Alignment:
| Q |
444 |
tttgaccgtaatgagatgactcgtatgatagcatgcgctgaagcttgcacgcgtctgtcagcaaatgatcgaccaacgatgagcacggtaatgtgaagaa |
543 |
Q |
| |
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||||||| ||||||||||||||||||| | |||||||||| ||||||||| |||| |||||||| |||||||| ||||||| ||||| ||||||| |
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| T |
32903929 |
tttgaccctaatgagatgactcgtatggtggcatgcgctgcagcttgcacacgtcactcagcaaagcgtcgaccaaagatgagccaggtaaagtgaagag |
32904028 |
T |
|
| Q |
544 |
tttgttttatcgtttacc |
561 |
Q |
| |
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|||||| |||| |||||| |
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| T |
32904029 |
tttgttatatcatttacc |
32904046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 46 - 220
Target Start/End: Original strand, 16394571 - 16394745
Alignment:
| Q |
46 |
ttatcaatagctgcttacaggtatctggatccagaatatgcttatactggacaacttactgataaatcagatgtttactcttatggagtcgtgctccttg |
145 |
Q |
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|||||||| ||||||||||||||| ||| ||||||||||| | || |||||||||||| || ||||||||||||| ||||||||||||| | ||||||| |
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| T |
16394571 |
ttatcaattgctgcttacaggtatatggctccagaatatgtctctagtggacaacttacagacaaatcagatgttttctcttatggagtcatactccttg |
16394670 |
T |
|
| Q |
146 |
agttaataactggacgacgaccgattgataaagctaaccctcacaagcacgttagtttggttgagtgggtaagtg |
220 |
Q |
| |
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||||||||||||||||| ||||||||||||| ||| || ||| | ||| ||||||||||||||||||||||| |
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| T |
16394671 |
agttaataactggacgaaagccgattgataaagataagacttacatgaacgatagtttggttgagtgggtaagtg |
16394745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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