View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11171_high_10 (Length: 399)
Name: NF11171_high_10
Description: NF11171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11171_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 119 - 351
Target Start/End: Complemental strand, 45058371 - 45058138
Alignment:
| Q |
119 |
gcataaatactggagtttgggggaggaagaaacgtggaatgtaaggtaacttggtttgtttgttgtttatagcctaaagccc-actttcttcaacttttt |
217 |
Q |
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| T |
45058371 |
gcataaatactggagtttgggggaggaagaaacgtggaatgtaaggtaacttggtttgtttgttgtttatagcctaaagccccactttcctcaacttttt |
45058272 |
T |
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| Q |
218 |
gatcacattataattttatcatcttaccctaaattgttctacttctgactcaacccaccatgcccaaattccatgcatacaattttattatattatcatc |
317 |
Q |
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| T |
45058271 |
gatcacattataattttatcatcttaccctaaattgttctacttctgactcaacccaccatgcccaaattccatgcatataattttattatattatcatc |
45058172 |
T |
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| Q |
318 |
aaatcatttatcataaggtcgttacttttcctcc |
351 |
Q |
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| T |
45058171 |
aaatcatttatcataaggtcgttacttttcctcc |
45058138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 48
Target Start/End: Complemental strand, 45058478 - 45058441
Alignment:
| Q |
11 |
cagagaagaattgatatataaaagagaagatgaagatg |
48 |
Q |
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| T |
45058478 |
cagagaagaattgatatataaaagagaagatgaagatg |
45058441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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