View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11171_high_18 (Length: 273)
Name: NF11171_high_18
Description: NF11171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11171_high_18 |
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Alignment Details
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 21 - 262
Target Start/End: Original strand, 5689881 - 5690122
Alignment:
| Q |
21 |
agaaggctcaacatgcttaccaagaagctcttgtggcaaatccttaatacctctcaaataaaatgtatagaaaatcttgaatggaaaaacaatttgatgc |
120 |
Q |
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| T |
5689881 |
agaaggctcaacatgtttaccaagaagctcttgtggcaaatccttaatacctctcaaataaaatgtatagaaaatcttgaatggaaaaacaatttgatgc |
5689980 |
T |
|
| Q |
121 |
aacttcacttgacccttaacaccttcaaatattccagaaccaccagtcacagctagataagtgtcctcaggataggttaaatatggtccttgaactgcta |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5689981 |
aacttcacttgacccttaacaccttcaaatattccagaaccaccagtcacagctagataagtgtcctcaggataggttaaatatggtccttgaactgcta |
5690080 |
T |
|
| Q |
221 |
agtgaccataatctccaaaatggaaactgtagattgcttcat |
262 |
Q |
| |
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| T |
5690081 |
agtgaccataatcaccaaaatggaaactgtagattgcttcat |
5690122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 24 - 262
Target Start/End: Original strand, 25914568 - 25914803
Alignment:
| Q |
24 |
aggctcaacatgcttaccaagaagctcttgtggcaaatccttaatacctctcaaataaaatgtatagaaaatcttgaatggaaaaacaatttgatgcaac |
123 |
Q |
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||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||| | | |
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| T |
25914568 |
aggctcaactggtttaccaagaagctcttgtggcaaatccttaatacccttcaaataaaatgtgtagaaaatcttaaatggaaaaacaatttgattgagc |
25914667 |
T |
|
| Q |
124 |
ttcacttgacccttaacaccttcaaatattccagaaccaccagtcacagctagataagtgtcctcaggataggttaaatatggtccttgaactgctaagt |
223 |
Q |
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| T |
25914668 |
ttcacttggcctgtaacaccttcaaaaattccagtaccaccagtcacagttagatatgtgtcctc---ataggttaggtaaggtccttgcacagctattt |
25914764 |
T |
|
| Q |
224 |
gaccataatctccaaaatggaaactgtagattgcttcat |
262 |
Q |
| |
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| T |
25914765 |
gaccatagtctccaacgtgaaaactgtagattgcttcat |
25914803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 67; Significance: 8e-30; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 24 - 262
Target Start/End: Complemental strand, 6792803 - 6792565
Alignment:
| Q |
24 |
aggctcaacatgcttaccaagaagctcttgtggcaaatccttaatacctctcaaataaaatgtatagaaaatcttgaatggaaaaacaatttgatgcaac |
123 |
Q |
| |
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|||||||| | | ||| |||||| ||| |||||||||||||||||||| | | ||||||||| || || ||||| |||||||| ||||||||||| | | |
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| T |
6792803 |
aggctcaataggattaacaagaaactcatgtggcaaatccttaatacccttaagataaaatgtgtaaaatatcttaaatggaaacacaatttgatgaagc |
6792704 |
T |
|
| Q |
124 |
ttcacttgacccttaacaccttcaaatattccagaaccaccagtcacagctagataagtgtcctcaggataggttaaatatggtccttgaactgctaagt |
223 |
Q |
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|| |||||||| | |||||||||||||||||||| |||||||||||||| | |||||| ||||| ||| |||||||| | ||||| || | | | |
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| T |
6792703 |
ttaacttgaccataaacaccttcaaatattccagttccaccagtcacagccaaataagtatcctcctcataagttaaataagaaccttgcacagaaatat |
6792604 |
T |
|
| Q |
224 |
gaccataatctccaaaatggaaactgtagattgcttcat |
262 |
Q |
| |
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||||||| |||||||||| ||||| || |||||||||| |
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|
| T |
6792603 |
gaccatactctccaaaataaaaactatatattgcttcat |
6792565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 52 - 167
Target Start/End: Complemental strand, 6800246 - 6800131
Alignment:
| Q |
52 |
tgtggcaaatccttaatacctctcaaataaaatgtatagaaaatcttgaatggaaaaacaatttgatgcaacttcacttgacccttaacaccttcaaata |
151 |
Q |
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|||||||||||||||||||| | | ||||||||| || || | ||| |||||||| ||||||||||| | ||| |||||||| | |||||||||||||| |
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| T |
6800246 |
tgtggcaaatccttaatacccataagataaaatgtgtaaaatagcttaaatggaaacacaatttgatgaagcttaacttgaccataaacaccttcaaata |
6800147 |
T |
|
| Q |
152 |
ttccagaaccaccagt |
167 |
Q |
| |
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|||||| |||||||| |
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| T |
6800146 |
ttccagttccaccagt |
6800131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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