View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11171_high_28 (Length: 238)
Name: NF11171_high_28
Description: NF11171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11171_high_28 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 16 - 238
Target Start/End: Original strand, 32166464 - 32166687
Alignment:
| Q |
16 |
aactcaaaagcaatcaccagaccaatttattcaacttaataaatcctacaacactcaaaccaagatttgtgtatatcaaatacacaaaatgctcaggact |
115 |
Q |
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| T |
32166464 |
aactcaaaagcaatcaccagaccaatttattcaacttaataaatcctacaacactcaaaccaagatttgtgtatatcaaatacacaaaatgctcaggact |
32166563 |
T |
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| Q |
116 |
agaccaaaataattaagtgctccaataacaattttatcatttgatagtaa-tattacatgtattggtgcatgtatttgactgcaatgttaggactaggac |
214 |
Q |
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| T |
32166564 |
agaccaaaataattaagtgctccaataacaattttatcatctgatagtaattattacatgtattggtgcatgtatttgactgcaatgttaggactaggac |
32166663 |
T |
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| Q |
215 |
taaaccaaaacagatccttccatc |
238 |
Q |
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| T |
32166664 |
tagaccaaaacagatccttccatc |
32166687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 34 - 106
Target Start/End: Original strand, 27261306 - 27261378
Alignment:
| Q |
34 |
agaccaatttattcaacttaataaatcctacaacactcaaaccaagatttgtgtatatcaaatacacaaaatg |
106 |
Q |
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| T |
27261306 |
agaccaatttattcaaatcaataaatcctacaacactcacacaatggtttgtgaatatgaaatacacaaaatg |
27261378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 40 - 106
Target Start/End: Complemental strand, 27276425 - 27276359
Alignment:
| Q |
40 |
atttattcaacttaataaatcctacaacactcaaaccaagatttgtgtatatcaaatacacaaaatg |
106 |
Q |
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| T |
27276425 |
atttattcaaatcaataaatcctacaacactcacacaatggtttgtgaatatgaaatacacaaaatg |
27276359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 99
Target Start/End: Complemental strand, 36485088 - 36485005
Alignment:
| Q |
17 |
actcaaaagcaatcaccagaccaatttattcaacttaataaatcctacaacactcaaaccaa-gatttgtgtatatcaaataca |
99 |
Q |
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|||| |||||||| ||| | ||||||||| |||| |||||||||||| ||||||| ||||| | ||||||||||| ||||||| |
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| T |
36485088 |
actcgaaagcaattaccgaatcaatttatttaactcaataaatcctactacactcacaccaaggttttgtgtatataaaataca |
36485005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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