View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11171_high_3 (Length: 544)
Name: NF11171_high_3
Description: NF11171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11171_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 13 - 331
Target Start/End: Complemental strand, 33166803 - 33166486
Alignment:
| Q |
13 |
cagaggaagataaaatcctcatccaatcatggctaaatatttctaaggatgcagttgtacgggggtaaatcaaagagcaaatgttttttggcaaaagaat |
112 |
Q |
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| T |
33166803 |
cagaggaagataaactcctcatccaatcatggctaaatatttctaaggatgcagttgtacaggggtaaatcaaagagcaaatgttttttggcaaaagaat |
33166704 |
T |
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| Q |
113 |
tgcagatggttataatgaacattgtggtcatttctttgcaaagggcccagtacaactaaaatctcgatggtcgaaggtgaattccataattaaaaaattt |
212 |
Q |
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| T |
33166703 |
tgcagatggttataatgaacattgtggttatttccttgcaaagggaccagtacaactaaaatctcgatggtcgaaggtgaattccataattaaaaaattt |
33166604 |
T |
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| Q |
213 |
ggagggtgctacaagcaagcctatccaagaagnnnnnnngtggtagcttatagtgatgtcatgggagatgcatattcaatctatactcaatatacacatg |
312 |
Q |
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| T |
33166603 |
ggagggtgctacaagcaagcctatccaagaagaaaaaaagtggtagcttagagtgatgtcatgggagatgcatatt-aatctatactcaatatacacatg |
33166505 |
T |
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| Q |
313 |
aatgtttcatgttagagtt |
331 |
Q |
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| T |
33166504 |
aatgtttcatgttagagtt |
33166486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 326 - 526
Target Start/End: Complemental strand, 33161524 - 33161330
Alignment:
| Q |
326 |
agagtttgcgtggagattgttaaaagatgaacctaaatagtcaaaccaatcacttgaaggagctagtaaaagaacaaagacttcggcttctggagcatac |
425 |
Q |
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| T |
33161524 |
agagtttgtgtggagattgttaaaagatgaacctaaatagtcaaaccaatcacttgaaggagctagtaaaagaacaaagacttcggcttctggagcata- |
33161426 |
T |
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| Q |
426 |
tcatcctcatcctcttctaattcgtgcatgccagaaagttacgattacaacccaactgaaaataatctggttcgtccaattgggacaaaaacagcaaaaa |
525 |
Q |
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| T |
33161425 |
-----cccatcctcttctaattcgtgcatgccagaaagttacgattacaacccaactgaaaataatgtggttcgtccaattgggacaaaagcaacaaaaa |
33161331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 40 - 134
Target Start/End: Complemental strand, 49281391 - 49281300
Alignment:
| Q |
40 |
catggctaaatatttctaaggatgcagttgtacgggggtaaatcaaagagcaaatgttttttggcaaaagaattgcagatggttataatgaacat |
134 |
Q |
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| T |
49281391 |
catggctaaatatttctacggatgcatttgta--ggggtaattcaaagagcaaatgctctttagc-aaataattacaaatggttataatgaacat |
49281300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 324 - 427
Target Start/End: Original strand, 34313183 - 34313286
Alignment:
| Q |
324 |
ttagagtttgcgtggagattgttaaaagatgaacctaaatagtcaaaccaatcacttgaaggagctagtaaaagaacaaagacttcggcttctggagcat |
423 |
Q |
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| T |
34313183 |
ttagagtatgcatggcgattgttgaaagatgaacctaaatggtcaaatacatcatttgaagtaggcggtaagagaaccaagatttctgcttcaggagcat |
34313282 |
T |
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| Q |
424 |
actc |
427 |
Q |
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|||| |
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| T |
34313283 |
actc |
34313286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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