View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11171_high_31 (Length: 201)
Name: NF11171_high_31
Description: NF11171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11171_high_31 |
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Alignment Details
Target: chr3 (Bit Score: 130; Significance: 1e-67; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 130; E-Value: 1e-67
Query Start/End: Original strand, 16 - 184
Target Start/End: Original strand, 21764942 - 21765108
Alignment:
| Q |
16 |
aagaataaatatgaaactagaggcagatatttcagggcagatatccaaacatgcacccccaatcaagcagactctcagttgcctggattaacccaactga |
115 |
Q |
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| T |
21764942 |
aagaataaatatgaaactagaggcagatatttcagagcagatatccggacatgcaccc--aatcaagcaggctctcagttgcctgaactaacccaactga |
21765039 |
T |
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| Q |
116 |
atgggaatgccctcccatcacagatgccatctttaggcgcatcaacgcttaatatggaccctcaagaat |
184 |
Q |
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| T |
21765040 |
atgggaatgccctcccatcacagatgtcatctttaggcgcatcaacgcttaatatggaccctcaagaat |
21765108 |
T |
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Target: chr7 (Bit Score: 91; Significance: 3e-44; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 10 - 175
Target Start/End: Original strand, 42860155 - 42860318
Alignment:
| Q |
10 |
agagagaagaataaatatgaaactagaggcagatatttcagggcagatatccaaacatgcacccccaatcaagcagactctcagttgcctggattaaccc |
109 |
Q |
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| T |
42860155 |
agagtgaagaatgaatatcaaactagaggcagatatttcagggcagatatccggacatgcaccc--aatcaagcaggctctcaattgcttggacatactc |
42860252 |
T |
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| Q |
110 |
aactgaatgggaatgccctcccatcacagatgccatctttaggcgcatcaacgcttaatatggacc |
175 |
Q |
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| T |
42860253 |
aactgaatgggaatgccctcccatcactgatgccatctttaggcggatcaacgattaacatggacc |
42860318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 15 - 159
Target Start/End: Original strand, 42852500 - 42852642
Alignment:
| Q |
15 |
gaagaataaatatgaaactagaggcagatatttcagggcagatatccaaacatgcacccccaatcaagcagactctcagttgcctggattaacccaactg |
114 |
Q |
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| T |
42852500 |
gaagaattaatatgaatcaacaagcagatattccagggcacatatctagacaggtaccc--aatcaagcagggtctcagttgcctggacagactcaactg |
42852597 |
T |
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| Q |
115 |
aatgggaatgccctcccatcacagatgccatctttaggcgcatca |
159 |
Q |
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|||| ||||||||||||| ||||||||||||||||||||| |||| |
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| T |
42852598 |
aatgtgaatgccctcccagcacagatgccatctttaggcggatca |
42852642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 105 - 184
Target Start/End: Original strand, 42853965 - 42854044
Alignment:
| Q |
105 |
aacccaactgaatgggaatgccctcccatcacagatgccatctttaggcgcatcaacgcttaatatggaccctcaagaat |
184 |
Q |
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||||||||||| |||||||| |||||||||||| ||| ||||||||||| |||||| |||||||||||||| |||||| |
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| T |
42853965 |
aacccaactgactgggaatgtcctcccatcacaaatgttatctttaggcggatcaacaattaatatggaccctgaagaat |
42854044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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