View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11171_low_12 (Length: 370)
Name: NF11171_low_12
Description: NF11171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11171_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 10 - 352
Target Start/End: Complemental strand, 9282797 - 9282455
Alignment:
| Q |
10 |
agtgagatgaacagtattcactgagctaagctaatagattcccatattagaattaagtttccattttttgtggtcttttttacaaatgaataacccacta |
109 |
Q |
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| T |
9282797 |
agtgacatgaacaggattcactgagctaagctaatagattcccatattagaattaagtttccattttttgtggtcttttttacaaatgaataacccacta |
9282698 |
T |
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| Q |
110 |
tttgcattgcctctattaagtttcaaatgggcctaactcatccttaaataactgcattgtaaggttagaagtgtcgctagttatatactctttttagcct |
209 |
Q |
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| T |
9282697 |
tttgcattgcctctattaagtttcaaatgggcctaactcatccttaaataactgcattgtaaggttagaagtgtcgctagttatatactctttttagcct |
9282598 |
T |
|
| Q |
210 |
ttatctctttttaatgtgagacttgagtttttctcagtacccccttcatacccaacactattgagtttgatgcatagataatatggtggatgactcgact |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
9282597 |
ttatctctttttaatgtgagacttgagtttttctcagtacccccttcatacccaacactattgagtttgatgcgtagataatatggtggatgactcgact |
9282498 |
T |
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| Q |
310 |
caataggctctgatatcatattaagtttttataatgggctcat |
352 |
Q |
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| T |
9282497 |
caataggctctgatatcatattaagtttttataatgggctcat |
9282455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 292 - 347
Target Start/End: Original strand, 20864637 - 20864692
Alignment:
| Q |
292 |
atggtggatgactcgactcaataggctctgatatcatattaagtttttataatggg |
347 |
Q |
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| T |
20864637 |
atggtgggtggctcgaatcaataggttctgataccatattaagtttttatattggg |
20864692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 296 - 342
Target Start/End: Complemental strand, 25669895 - 25669849
Alignment:
| Q |
296 |
tggatgactcgactcaataggctctgatatcatattaagtttttata |
342 |
Q |
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|||||||| | | |||||||||||||||| ||||||||||||||||| |
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| T |
25669895 |
tggatgacccaaatcaataggctctgataccatattaagtttttata |
25669849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 344
Target Start/End: Original strand, 34655137 - 34655189
Alignment:
| Q |
292 |
atggtggatgactcgactcaataggctctgatatcatattaagtttttataat |
344 |
Q |
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| T |
34655137 |
atggtggatgacccgaatcgatatgctctgataccatatgaagtttttataat |
34655189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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