View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11171_low_14 (Length: 360)
Name: NF11171_low_14
Description: NF11171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11171_low_14 |
 | |
|
| [»] chr2 (3 HSPs) |
| |
|
| [»] scaffold1463 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 272; Significance: 1e-152; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 16 - 360
Target Start/End: Original strand, 17832602 - 17832947
Alignment:
| Q |
16 |
attatgtttcctaatggacatgtataaataattgtctataatttgaagnnnnnnnnnnnnnn-ggaaatctgatgtggtttcctgggtattttcagcatg |
114 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17832602 |
attatgcttcctaatggacatgtataaataattgtctataatttgaagtttttctctttttttggaaatctgatgtggtttcctgggtattttcagcatg |
17832701 |
T |
|
| Q |
115 |
taaactgtttgcagcaaagttttctgatggtacaatacttcagcagagcataaaggcatgcattttgttcctagattttgatcaatctctgcgtaatctt |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17832702 |
taaactgtttgcagcaaagttttctgatggtacaatactgcagcagagcataaaggcatgcattttgttcctagattttgatcaatctctgcgtaatctt |
17832801 |
T |
|
| Q |
215 |
tcatagtttctattaaaactattttcatactttttgtggtgttgtctttctttcttttgagttatgatgtcttgaatccctcaatgcaagtgttattaca |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
17832802 |
tcatagtttctattaaaactattttcatactttttgtggtgttgtctttctttcttttgagttatgatgtcttgaatccctcaatgcaagtgtgattaca |
17832901 |
T |
|
| Q |
315 |
atgaagtattgaagttctttacatttaagactccctgtttgattta |
360 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| || ||||||||| |
|
|
| T |
17832902 |
atgaagtattggagttctttacatttaagactcactatttgattta |
17832947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 270 - 359
Target Start/End: Original strand, 7391030 - 7391119
Alignment:
| Q |
270 |
tttgagttatgatgtcttgaatccctcaatgcaagtgttattacaatgaagtattgaagttctttacatttaagactccctgtttgattt |
359 |
Q |
| |
|
||||| || ||||||||||||| ||||||||||| ||| || ||| | || |||||||| | |||| ||||||||||||||||| |||| |
|
|
| T |
7391030 |
tttgatttgtgatgtcttgaattcctcaatgcaaatgtgataacacttaactattgaagatttttaattttaagactccctgtttcattt |
7391119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 270 - 359
Target Start/End: Complemental strand, 19586082 - 19585993
Alignment:
| Q |
270 |
tttgagttatgatgtcttgaatccctcaatgcaagtgttattacaatgaagtattgaagttctttacatttaagactccctgtttgattt |
359 |
Q |
| |
|
||||| || ||||||||||||| ||||||||||| ||| || ||| | || |||||||| | |||| ||||||||||||||||| |||| |
|
|
| T |
19586082 |
tttgatttgtgatgtcttgaattcctcaatgcaaatgtgataacacttaactattgaagatttttaattttaagactccctgtttcattt |
19585993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1463 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold1463
Description:
Target: scaffold1463; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 270 - 359
Target Start/End: Original strand, 440 - 529
Alignment:
| Q |
270 |
tttgagttatgatgtcttgaatccctcaatgcaagtgttattacaatgaagtattgaagttctttacatttaagactccctgtttgattt |
359 |
Q |
| |
|
||||| || ||||||||||||| ||||||||||| ||| || ||||| || |||||||| | |||| |||||||||||||||||| |||| |
|
|
| T |
440 |
tttgatttgtgatgtcttgaattcctcaatgcaaatgtgataacaattaactattgaagatttttaaatttaagactccctgtttcattt |
529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 359
Target Start/End: Complemental strand, 11657815 - 11657726
Alignment:
| Q |
270 |
tttgagttatgatgtcttgaatccctcaatgcaagtgttattacaatgaagtattgaagttctttacatttaagactccctgtttgattt |
359 |
Q |
| |
|
||||| || ||||||||||||| ||||||||||| ||| || ||| | || |||||||| | |||| ||||||||| ||||||| |||| |
|
|
| T |
11657815 |
tttgatttgtgatgtcttgaattcctcaatgcaaatgtgataacacttaactattgaagatttttaattttaagactacctgtttcattt |
11657726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University