View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11171_low_15 (Length: 353)
Name: NF11171_low_15
Description: NF11171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11171_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 15 - 337
Target Start/End: Complemental strand, 44690079 - 44689757
Alignment:
| Q |
15 |
gatacatggactaaaagcaaaaatagtccaacttactaggaccttttacatatttaagccattatataactatttaatatttctaataattacctcaaca |
114 |
Q |
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|||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44690079 |
gatacagggattaaaagcaaaaatagtccaacttactaggaccttttacatatttaagccattatataactatttaatatttctaataattacctcaaca |
44689980 |
T |
|
| Q |
115 |
atatattttggccagattgatgtttcatcagggatagaagaaattaatatttttcaaatgttgggacaaattacactgtcggggaaacatctttttagta |
214 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44689979 |
atatattttggccggattgatgtttcatcagggatagaagaaattaatatttttcaaatgttgggacaaattacactgtcggggaaacatctttttagta |
44689880 |
T |
|
| Q |
215 |
ccatgataagttaagtttacctgattaaactgatcccttgtgagaggtatatgtctaactcnnnnnnnttagcatacttgtataatcatgttttttgttt |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |
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| T |
44689879 |
ccatgataagttaagtttacctgattaaactgatcccttgtgagaggtatatgtctaactcaaaaaaattagcatacttgtataatcatcttttttgttt |
44689780 |
T |
|
| Q |
315 |
ggtacaaaatgacctgcattatt |
337 |
Q |
| |
|
||||||||||||||||||||||| |
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| T |
44689779 |
ggtacaaaatgacctgcattatt |
44689757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 75 - 326
Target Start/End: Complemental strand, 44680754 - 44680505
Alignment:
| Q |
75 |
attatataactatttaatatttctaataattacctcaacaatatattttggccagattgatgtttcatcagggatagaagaaattaatatttttcaaatg |
174 |
Q |
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||||||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
44680754 |
attatataactatttaatattcctaataattacctcaacactatattttggccgcattgatgtttcatcaaggatagaagaaattaatatttttcaaatg |
44680655 |
T |
|
| Q |
175 |
ttgggacaaattacactgtcggggaaacatctttttagtaccatgataagttaagtttacctgattaaactgatcccttgtgagaggtatatgtctaact |
274 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||| ||| ||||||||| |
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| T |
44680654 |
ttgggacaaattacactgtcggggaaacatctttttagtaccatgataagttaagtttacctgattaaattgagccctggtgagagttatgtgtctaact |
44680555 |
T |
|
| Q |
275 |
cnnnnnnnttagcatacttgtataatcatgttttttgtttggtacaaaatga |
326 |
Q |
| |
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| | |||||||||||||||||| ||||||||||||||||||||||| |
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| T |
44680554 |
c--aaaaataagcatacttgtataatcaagttttttgtttggtacaaaatga |
44680505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 88; Significance: 3e-42; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 75 - 327
Target Start/End: Original strand, 41983565 - 41983801
Alignment:
| Q |
75 |
attatataactatttaatatttctaataattacctcaacaatatattttggccagattgatgtttcatcagggatagaagaaattaatatttttcaaatg |
174 |
Q |
| |
|
||||||| ||||||||| ||| ||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |
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| T |
41983565 |
attatatgactatttaagattcctaataattacatcaacaatatattttggccagattaatgtttct------------gaaattaatatttttcaaatg |
41983652 |
T |
|
| Q |
175 |
ttgggacaaattacactgtcggggaaacatctttttagtaccatgataagttaagtttacctgattaaactgatcccttgtgagaggtatatgtctaact |
274 |
Q |
| |
|
|||||||||| |||||||| ||||||| ||||||||||||||| ||||||||| | ||| || |||||| ||| |||| || ||||||| ||| ||||| |
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| T |
41983653 |
ttgggacaaactacactgttggggaaatatctttttagtaccacgataagttatgcttatctaattaaattgagccctcgt--gaggtatgtgtttaact |
41983750 |
T |
|
| Q |
275 |
cnnnnnnnttagcatacttgtataatcatgttttttgtttggtacaaaatgac |
327 |
Q |
| |
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|| ||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
41983751 |
--taaaaatttgcatacttgtataatcaagttttttgtttggtacaaaatgac |
41983801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 84 - 223
Target Start/End: Original strand, 9455592 - 9455732
Alignment:
| Q |
84 |
ctatttaatatttctaataattacctcaacaatatattttggccagattgatgtttcatcagggatag-aagaaattaatatttttcaaatgttgggaca |
182 |
Q |
| |
|
||||||| ||| |||| ||| |||||| ||||||||| |||||||||| ||||||| ||| | | |||||| |||||||||||||||||||||||| |
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| T |
9455592 |
ctatttatgattcctaaaaatgacctcatcaatatattctggccagatttatgtttctgcagatgtggcaagaaaataatatttttcaaatgttgggaca |
9455691 |
T |
|
| Q |
183 |
aattacactgtcggggaaacatctttttagtaccatgataa |
223 |
Q |
| |
|
||||||| ||| || ||| |||||| ||||||||||||||| |
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| T |
9455692 |
aattacattgttggagaagcatcttcttagtaccatgataa |
9455732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 76
Target Start/End: Complemental strand, 55196633 - 55196572
Alignment:
| Q |
15 |
gatacatggactaaaagcaaaaatagtccaacttactaggaccttttacatatttaagccat |
76 |
Q |
| |
|
|||||||||||||||| ||||||| | ||||||| |||||||||| | |||||||||||| |
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|
| T |
55196633 |
gatacatggactaaaaccaaaaatgcgcgaacttacaaggacctttttcttatttaagccat |
55196572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 83
Target Start/End: Complemental strand, 32613910 - 32613874
Alignment:
| Q |
47 |
ttactaggaccttttacatatttaagccattatataa |
83 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| |||| |
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| T |
32613910 |
ttacaaggaccttttacatatttaagccattaaataa |
32613874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 22 - 74
Target Start/End: Original strand, 9419825 - 9419877
Alignment:
| Q |
22 |
ggactaaaagcaaaaatagtccaacttactaggaccttttacatatttaagcc |
74 |
Q |
| |
|
|||||||||||||||| | ||||||||| ||||||||||||||||||||||| |
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| T |
9419825 |
ggactaaaagcaaaaacacgccaacttacaaggaccttttacatatttaagcc |
9419877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 121 - 227
Target Start/End: Original strand, 233713 - 233820
Alignment:
| Q |
121 |
tttggccagattgatgtttcatcagggatag-aagaaattaatatttttcaaatgttgggacaaattacactgtcggggaaacatctttttagtaccatg |
219 |
Q |
| |
|
||||||||||||||||||| ||| | ||| ||||||||||||||||| ||||||| || |||||| | ||| |||||| |||||| |||||| || | |
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| T |
233713 |
tttggccagattgatgtttatgcagaggtagcaagaaattaatatttttaaaatgttagggtaaattaaattgttggggaagcatcttcttagtagcaag |
233812 |
T |
|
| Q |
220 |
ataagtta |
227 |
Q |
| |
|
|||||||| |
|
|
| T |
233813 |
ataagtta |
233820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 75
Target Start/End: Original strand, 20208471 - 20208524
Alignment:
| Q |
22 |
ggactaaaagcaaaaatagtccaacttactaggaccttttacatatttaagcca |
75 |
Q |
| |
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|||||||||||||||| | ||||||||| ||| ||||||||||||||||||| |
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|
| T |
20208471 |
ggactaaaagcaaaaacacaccaacttacagggatcttttacatatttaagcca |
20208524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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