View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11171_low_17 (Length: 275)
Name: NF11171_low_17
Description: NF11171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11171_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 18 - 263
Target Start/End: Original strand, 7933727 - 7933970
Alignment:
| Q |
18 |
ggaaaaactatgttcggagcatgaagcatgaattagttactgatgctgcaacttacaagatatgaacaattttcagcatcttgaagtagcctatacatgc |
117 |
Q |
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| T |
7933727 |
ggaaaaactatgttcggagcatgaagcatgaattagttactgatgctgcaacttacaagatatgaacaattttcagcatcttgaagtagcctatacatgc |
7933826 |
T |
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| Q |
118 |
tccatttttgtctttttctcaagtactaatgcaattttataagtgtaaaactgcatgaagacaagagcaagtacttattagcttgaaccgttccattcgt |
217 |
Q |
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|||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7933827 |
tccatttttgtctttttcacaagtactaatgcaattt--taagtgtaaaactgcatgaagacaagagcaagtacttattagcttgaaccgttccattcgt |
7933924 |
T |
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| Q |
218 |
cgtagaactctttgacaaactccaccatgaacttgtgccttctctc |
263 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7933925 |
cgtagaactctttgacaaactccaccatgaacttgtgccttctctc |
7933970 |
T |
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