View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11171_low_2 (Length: 561)
Name: NF11171_low_2
Description: NF11171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11171_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 9 - 348
Target Start/End: Complemental strand, 33166824 - 33166486
Alignment:
| Q |
9 |
agcagagagtaaggttcaccccagaggaagataaaatcctcatccaatcatggctaaatatttctaaggatgcagttgtacgggggtaaatcaaagagca |
108 |
Q |
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| T |
33166824 |
agcaaagagtaaggttcaccccagaggaagataaactcctcatccaatcatggctaaatatttctaaggatgcagttgtacaggggtaaatcaaagagca |
33166725 |
T |
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| Q |
109 |
aatgttttttggcaaaagaattgcagatggttataatgaacattgtggtcatttctttgcaaagggcccagtacaactaaaatctcgatggtcgaaggtg |
208 |
Q |
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| T |
33166724 |
aatgttttttggcaaaagaattgcagatggttataatgaacattgtggttatttccttgcaaagggaccagtacaactaaaatctcgatggtcgaaggtg |
33166625 |
T |
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| Q |
209 |
aattccataattaaaaaatttggagggtgctacaagcaagcctatccaagaagnnnnnnngtggtagcttatagtgatgtcatgggagatgcatattcaa |
308 |
Q |
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| T |
33166624 |
aattccataattaaaaaatttggagggtgctacaagcaagcctatccaagaagaaaaaaagtggtagcttagagtgatgtcatgggagatgcatatt-aa |
33166526 |
T |
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| Q |
309 |
tctatactcaatatacacatgaatgtttcatgttagagtt |
348 |
Q |
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| T |
33166525 |
tctatactcaatatacacatgaatgtttcatgttagagtt |
33166486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 343 - 543
Target Start/End: Complemental strand, 33161524 - 33161330
Alignment:
| Q |
343 |
agagtttgcgtggagattgttaaaagatgaacctaaatagtcaaaccaatcacttgaaggagctagtaaaagaacaaagacttcggcttctggagcatac |
442 |
Q |
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| T |
33161524 |
agagtttgtgtggagattgttaaaagatgaacctaaatagtcaaaccaatcacttgaaggagctagtaaaagaacaaagacttcggcttctggagcata- |
33161426 |
T |
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| Q |
443 |
tcatcctcatcctcttctaattcgtgcatgccagaaagttacgattacaacccaactgaaaataatctggttcgtccaattgggacaaaaacagcaaaaa |
542 |
Q |
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| T |
33161425 |
-----cccatcctcttctaattcgtgcatgccagaaagttacgattacaacccaactgaaaataatgtggttcgtccaattgggacaaaagcaacaaaaa |
33161331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 151
Target Start/End: Complemental strand, 49281426 - 49281300
Alignment:
| Q |
18 |
taaggttcaccccagaggaagataaaatcctcatccaatcatggctaaatatttctaaggatgcagttgtacgggggtaaatcaaagagcaaatgttttt |
117 |
Q |
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| T |
49281426 |
taaggttcatccgagaggaagataaactcctca--ca--catggctaaatatttctacggatgcatttgta--ggggtaattcaaagagcaaatgctctt |
49281333 |
T |
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| Q |
118 |
tggcaaaagaattgcagatggttataatgaacat |
151 |
Q |
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| T |
49281332 |
tagc-aaataattacaaatggttataatgaacat |
49281300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 341 - 444
Target Start/End: Original strand, 34313183 - 34313286
Alignment:
| Q |
341 |
ttagagtttgcgtggagattgttaaaagatgaacctaaatagtcaaaccaatcacttgaaggagctagtaaaagaacaaagacttcggcttctggagcat |
440 |
Q |
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||||||| ||| ||| ||||||| |||||||||||||||| |||||| |||| |||||| || |||| ||||| |||| ||| ||||| ||||||| |
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| T |
34313183 |
ttagagtatgcatggcgattgttgaaagatgaacctaaatggtcaaatacatcatttgaagtaggcggtaagagaaccaagatttctgcttcaggagcat |
34313282 |
T |
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| Q |
441 |
actc |
444 |
Q |
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|||| |
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| T |
34313283 |
actc |
34313286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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