View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11171_low_23 (Length: 252)
Name: NF11171_low_23
Description: NF11171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11171_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 5 - 242
Target Start/End: Original strand, 17832990 - 17833227
Alignment:
| Q |
5 |
tttgttttggttttaaataggaaggataaaccattaaagtccaataggctgtgtgatatctatatataatgtattttccttcatgtatttagctaccatg |
104 |
Q |
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| T |
17832990 |
tttgtttcggttttaaataggaaggataaaccattaaagtccaataggctgtgtgatatctatatataatgtattttccttcatgtatttagctatcatg |
17833089 |
T |
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| Q |
105 |
taagtgttgttgacatattcttccaatgaatgaaagtacttaaagtaaattcaagtttcaattttgactatattgtgttctggatttttattttcaaaac |
204 |
Q |
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| T |
17833090 |
taagtgttgctgacacattcttccaatgaatgaaagtacttaaagtaaattcaagtttcaattttgactatattgtgttttggatttttattttcaaaac |
17833189 |
T |
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| Q |
205 |
aaatagtaggattgtagttgtggcttatgttgcctttg |
242 |
Q |
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| T |
17833190 |
aaatagtaggattgtagttgtggcttatgttgcctttg |
17833227 |
T |
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