View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11171_low_24 (Length: 250)
Name: NF11171_low_24
Description: NF11171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11171_low_24 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 16 - 250
Target Start/End: Complemental strand, 24245210 - 24244976
Alignment:
| Q |
16 |
ataacagataagctgtgagctttcaaacccccaacaaattcaacaatcataacaatagcatagaaaactattagtaaagaaagtttcttcgcggactcat |
115 |
Q |
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| T |
24245210 |
ataacagataagctgtgagctttcaaacccccaacaaattcaacaatcataacaatagcatagaaaactattagtaaagaaagtttcttcgcggactcat |
24245111 |
T |
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| Q |
116 |
tcgacgctccaacactcttttccttcgaagaaaaacgacaaacagaatttttgcgcgaggataatgacaatgttgtcataggtattccagtttcctctat |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |
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| T |
24245110 |
tcgacgctccaacactcttttccttcgaagaaaaacgacaaacagaatttttgcgcgaggaaagtgacaatgttgtcataggtattccagtttcctctat |
24245011 |
T |
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| Q |
216 |
tgatcttgcatctgagataggcgctttctcgtgtt |
250 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
24245010 |
tgatcttgcatctgagataggcgctttctcgtgtt |
24244976 |
T |
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