View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11171_low_25 (Length: 248)
Name: NF11171_low_25
Description: NF11171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11171_low_25 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-128; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-128
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 32166758 - 32166996
Alignment:
| Q |
1 |
ctctagctgatgcctgaacaaatgtattctaaaaattagtaccacaatgacaaagataatcacaatgagggaatagaaaagatagtaatataacagtact |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
32166758 |
ctctagctgatgcctgaacaaatgtattctaaaaattagtaccacaatgacaaagataatcacaatgagggaatagaaaagatagtaatataatagtact |
32166857 |
T |
|
| Q |
101 |
acctgataagcctttaaatcacacttccccaacttcttgctccaatagggggccaagccacaatgtgcactcccacaaacaggatcctgaaagcaaatat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32166858 |
acctgataagcctttaaatcacacttccccaacttcttgctccaatagggtgccaagccacaatgtgcactcccacaaacaggatcctgaaagcaaatat |
32166957 |
T |
|
| Q |
201 |
aggttattaacaacattatctcatttcttctattttcat |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32166958 |
aggttattaacaacattatctcatttcttctattttcat |
32166996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 32156392 - 32156581
Alignment:
| Q |
1 |
ctctagctgatgcctgaacaaatgtattctaaaaattagtaccacaatgacaaagataatcacaatgagggaatagaaaagatagtaatataacagtact |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| ||||||||||||| ||||| ||||||| |||||||||||||||||||||||| |||| |||||| |
|
|
| T |
32156392 |
ctctagctgatgcctgaacaaatgtaatctaaaatttagtaccacaataacaaaaataatcataatgagggaatagaaaagatagta--ataatagtact |
32156489 |
T |
|
| Q |
101 |
acctgataagcctttaaatcacacttccccaacttcttgctccaatagggggccaagccacaatgtgcactcccacaaacaggatcctgaaa |
192 |
Q |
| |
|
|||||||||||||||||||||||||| || | |||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||| |
|
|
| T |
32156490 |
acctgataagcctttaaatcacactttcctagtttcttgctccaataggatgccaatccacaatgtgcactcccacaaactggatcctgaaa |
32156581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 106 - 229
Target Start/End: Original strand, 27261831 - 27261956
Alignment:
| Q |
106 |
ataagcctttaaatcacacttccccaacttcttgctccaatagggggccaagccacaatgtgcactcccacaaacaggatcctgaaagc--aaatatagg |
203 |
Q |
| |
|
|||||| ||||||||||||||||||| |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| || | |
|
|
| T |
27261831 |
ataagcttttaaatcacacttccccagtttctcgctccaatagggtgccaagccacaatgtgcactcccacaaacaggatcctgaaagagtaaacatgag |
27261930 |
T |
|
| Q |
204 |
ttattaacaacattatctcatttctt |
229 |
Q |
| |
|
|||| ||||||||||||||||||||| |
|
|
| T |
27261931 |
ttatcaacaacattatctcatttctt |
27261956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 100 - 239
Target Start/End: Original strand, 32164011 - 32164149
Alignment:
| Q |
100 |
tacctgataagcctttaaatcacacttccccaacttcttgctccaatagggggccaagccacaatgtgcactcccacaaacaggatcctgaaagcaaata |
199 |
Q |
| |
|
|||||||||||||||||||||||| || | | ||||||||||||||||| ||||||||||| || ||||||||||||||||||||||| || |||||| |
|
|
| T |
32164011 |
tacctgataagcctttaaatcacatttttcgagcttcttgctccaataggatgccaagccacagtgggcactcccacaaacaggatcctg-aaccaaata |
32164109 |
T |
|
| Q |
200 |
taggttattaacaacattatctcatttcttctattttcat |
239 |
Q |
| |
|
| ||||| ||||| ||||||| ||||||||||||||||| |
|
|
| T |
32164110 |
tgagttatcaacaatattatctaatttcttctattttcat |
32164149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 106 - 239
Target Start/End: Original strand, 27339752 - 27339888
Alignment:
| Q |
106 |
ataagcctttaaatcacacttccccaacttcttgctccaatagggggccaagccacaatgtgcactcccacaaacaggatcctgaaagc--aaatatagg |
203 |
Q |
| |
|
|||||| ||||||||||||||||||| |||| |||||||||||| ||||| |||||||||||| ||||||||||||||||||||||| ||| || | |
|
|
| T |
27339752 |
ataagcttttaaatcacacttccccagtttctcgctccaatagggtgccaaaccacaatgtgcagtcccacaaacaggatcctgaaagagtaaacatgag |
27339851 |
T |
|
| Q |
204 |
ttattaacaacattatctcatttc-ttctattttcat |
239 |
Q |
| |
|
|||| ||||| ||||||||||||| |||||||||||| |
|
|
| T |
27339852 |
ttatcaacaatattatctcatttctttctattttcat |
27339888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 106 - 193
Target Start/End: Original strand, 27320815 - 27320902
Alignment:
| Q |
106 |
ataagcctttaaatcacacttccccaacttcttgctccaatagggggccaagccacaatgtgcactcccacaaacaggatcctgaaag |
193 |
Q |
| |
|
|||||| ||||||||||||||||||| || | |||||||||||| |||||||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
27320815 |
ataagcttttaaatcacacttccccagtttttcgctccaatagggtgccaagccacaatgtgcagtcccacaaacaggatcctaaaag |
27320902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 95 - 189
Target Start/End: Complemental strand, 27362632 - 27362538
Alignment:
| Q |
95 |
agtactacctgataagcctttaaatcacacttccccaacttcttgctccaatagggggccaagccacaatgtgcactcccacaaacaggatcctg |
189 |
Q |
| |
|
|||| |||||||||||||||||||||||| || || | ||||||||||||||||| ||||| |||||||| |||| ||||| ||| ||||||| |
|
|
| T |
27362632 |
agtagtacctgataagcctttaaatcacattttccaagcttcttgctccaataggatgccaaaccacaatggacactaccacagacaagatcctg |
27362538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 100 - 164
Target Start/End: Complemental strand, 27333852 - 27333788
Alignment:
| Q |
100 |
tacctgataagcctttaaatcacacttccccaacttcttgctccaatagggggccaagccacaat |
164 |
Q |
| |
|
||||| |||||||||||||||||| || |||| ||||||||||||||||| ||||||| ||||| |
|
|
| T |
27333852 |
tacctcataagcctttaaatcacattttcccagcttcttgctccaataggatgccaagctacaat |
27333788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 100 - 192
Target Start/End: Complemental strand, 44291910 - 44291818
Alignment:
| Q |
100 |
tacctgataagcctttaaatcacacttccccaacttcttgctccaatagggggccaagccacaatgtgcactcccacaaacaggatcctgaaa |
192 |
Q |
| |
|
|||||| |||||||||||||||||||| |||| |||||| |||||||||| |||| ||| |||||||| | |||||||||||||||||||| |
|
|
| T |
44291910 |
tacctggtaagcctttaaatcacactttcccagcttcttactccaataggatgccatgcctaaatgtgcagtgccacaaacaggatcctgaaa |
44291818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University