View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11171_low_29 (Length: 236)
Name: NF11171_low_29
Description: NF11171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11171_low_29 |
 | |
|
| [»] chr7 (2 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 24122458 - 24122223
Alignment:
| Q |
1 |
agacatctcatttatctcagttattcattttaagaggtgaatttctaaccaccagactatttgaccaaaaaatgaaattgtgtaaaaactacacccaaag |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24122458 |
agacatctcacttatctcagttattcattttaagaggtgaatttctaaccaccagactatttgaccaaaaaatgaaattgtgtaaaaactacacccaaag |
24122359 |
T |
|
| Q |
101 |
aaagcatccattttacaagttaataatgatgtattcctaatttgcttatctcaggttaatctgtgatttctatcctatggctgctggaaatttaagtgaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24122358 |
aaagcatccattttacaagttaataatgatgtattcctaatttgcttatctcaggttaatctgtgatttctatcctatggctgctggaaatttaagtgaa |
24122259 |
T |
|
| Q |
201 |
tcagttgaacaaggtgacgaagttaccttgagagtc |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
24122258 |
tcagttgaacaaggtgacgaagttaccttgagagtc |
24122223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 235
Target Start/End: Complemental strand, 24132693 - 24132655
Alignment:
| Q |
197 |
tgaatcagttgaacaaggtgacgaagttaccttgagagt |
235 |
Q |
| |
|
||||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
24132693 |
tgaatcatttgaacaaggtgacaaagttaccttgagagt |
24132655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 1861430 - 1861486
Alignment:
| Q |
16 |
ctcagttattcattttaagaggtgaatttctaaccaccagactatttgaccaaaaaa |
72 |
Q |
| |
|
|||| |||||||||||||||||||||||| || |||| |||||| ||||| |||||| |
|
|
| T |
1861430 |
ctcacttattcattttaagaggtgaatttttagccacaagactacttgacaaaaaaa |
1861486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 64
Target Start/End: Original strand, 29484932 - 29484975
Alignment:
| Q |
21 |
ttattcattttaagaggtgaatttctaaccaccagactatttga |
64 |
Q |
| |
|
|||||||||||||||||||||| |||| |||| ||||||||||| |
|
|
| T |
29484932 |
ttattcattttaagaggtgaatatctagccactagactatttga |
29484975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 69
Target Start/End: Complemental strand, 24284261 - 24284213
Alignment:
| Q |
21 |
ttattcattttaagaggtgaatttctaaccaccagactatttgaccaaa |
69 |
Q |
| |
|
|||||||||||||||||||||| |||| |||| || |||||||| |||| |
|
|
| T |
24284261 |
ttattcattttaagaggtgaatgtctagccactaggctatttgaacaaa |
24284213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 75
Target Start/End: Original strand, 2233170 - 2233224
Alignment:
| Q |
21 |
ttattcattttaagaggtgaatttctaaccaccagactatttgaccaaaaaatga |
75 |
Q |
| |
|
|||||||||||||||| ||||||| |||||| | | |||||||||||||||||| |
|
|
| T |
2233170 |
ttattcattttaagagttgaatttttaaccaataaattatttgaccaaaaaatga |
2233224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University